Insights into the Genomic and Phenotypic Landscape of the Oleaginous Yeast

diversity killer toxin phenotype population genomics transposable elements

Journal

Journal of fungi (Basel, Switzerland)
ISSN: 2309-608X
Titre abrégé: J Fungi (Basel)
Pays: Switzerland
ID NLM: 101671827

Informations de publication

Date de publication:
04 Jan 2023
Historique:
received: 15 12 2022
revised: 30 12 2022
accepted: 01 01 2023
entrez: 21 1 2023
pubmed: 22 1 2023
medline: 22 1 2023
Statut: epublish

Résumé

Although

Identifiants

pubmed: 36675897
pii: jof9010076
doi: 10.3390/jof9010076
pmc: PMC9865632
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : National Research Institute for Agriculture, Food and Environment
ID : AIP-Bioressources 2011
Organisme : DGAC
ID : convention 2012 93 0805
Organisme : SAS PIVERT
ID : Investment for the Future ("Investissements d'Avenir"), grant number ANR-001

Références

Chromosoma. 1997 Nov;106(6):380-90
pubmed: 9362546
J Biol Chem. 2009 Mar 13;284(11):7126-37
pubmed: 19131334
Yeast. 2005 Sep;22(12):979-91
pubmed: 16134118
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102
pubmed: 32559359
PLoS One. 2015 Nov 18;10(11):e0143096
pubmed: 26580812
FEBS Lett. 2000 Dec 22;487(1):95-100
pubmed: 11152892
Genome Announc. 2014 Jul 03;2(4):
pubmed: 24994799
PLoS One. 2016 Sep 07;11(9):e0162363
pubmed: 27603307
Genetics. 1977 Dec;87(4):621-32
pubmed: 17248782
Mycobiology. 2017 Dec;45(4):385-391
pubmed: 29371807
Trends Biotechnol. 2023 Feb;41(2):242-254
pubmed: 35940976
Nat Genet. 2015 Mar;47(3):235-41
pubmed: 25665008
Bioresour Technol. 2021 Jun;329:124910
pubmed: 33677424
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Front Bioeng Biotechnol. 2022 Apr 25;10:888869
pubmed: 35547171
Mol Biol Evol. 2015 Jan;32(1):184-92
pubmed: 25349286
FASEB J. 2009 Aug;23(8):2349-59
pubmed: 19289605
G3 (Bethesda). 2014 Mar 20;4(3):547-52
pubmed: 24474170
FEMS Yeast Res. 2021 Mar 18;21(2):
pubmed: 33595651
Appl Microbiol Biotechnol. 2021 Feb;105(4):1745-1758
pubmed: 33523248
J Bacteriol. 1994 May;176(9):2477-82
pubmed: 8169196
Eukaryot Cell. 2005 Mar;4(3):615-24
pubmed: 15755923
Appl Microbiol Biotechnol. 2019 Oct;103(20):8585-8596
pubmed: 31511932
Biosci Biotechnol Biochem. 2013;77(6):1149-54
pubmed: 23748781
Genome Res. 2010 Sep;20(9):1297-303
pubmed: 20644199
Mol Biol Evol. 2002 May;19(5):664-77
pubmed: 11961100
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Toxins (Basel). 2021 Sep 01;13(9):
pubmed: 34564619
Folia Microbiol (Praha). 2004;49(6):713-7
pubmed: 15881408
Genome Res. 2017 Jul;27(7):1207-1219
pubmed: 28611159
FEMS Microbiol Rev. 1997 Apr;19(4):219-37
pubmed: 9167256
Yeast. 2022 Nov;39(11-12):553-606
pubmed: 36366783
PLoS One. 2013 May 07;8(5):e63356
pubmed: 23667605
Nature. 2004 Jul 1;430(6995):35-44
pubmed: 15229592
Eukaryot Cell. 2007 Apr;6(4):734-43
pubmed: 17322346
C R Biol. 2011 Aug-Sep;334(8-9):679-86
pubmed: 21819950
Genome Biol Evol. 2020 Jun 1;12(6):795-807
pubmed: 32302403
FEMS Yeast Res. 2010 Nov;10(7):917-27
pubmed: 20726896
Fungal Genet Biol. 2012 Jan;49(1):58-64
pubmed: 22119766
Genome Biol. 2010;11(6):R65
pubmed: 20573210
Bioresour Technol. 2014 Jun;161:320-6
pubmed: 24727354
Metab Eng. 2019 Jul;54:83-95
pubmed: 30885767
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Proc R Soc Lond B Biol Sci. 1957 Aug 24;147(926):1-9
pubmed: 13465709
Nature. 2018 Apr;556(7701):339-344
pubmed: 29643504
J Agric Food Chem. 2017 May 24;65(20):4133-4139
pubmed: 28474529
Curr Genet. 1993 May-Jun;23(5-6):450-4
pubmed: 8319301
Yeast. 2019 May;36(5):319-327
pubmed: 30945772
Fly (Austin). 2012 Apr-Jun;6(2):80-92
pubmed: 22728672
Curr Microbiol. 2006 Feb;52(2):134-42
pubmed: 16392008
Anal Biochem. 1986 Jan;152(1):141-5
pubmed: 3954036
J Fungi (Basel). 2021 Jul 10;7(7):
pubmed: 34356927
Microorganisms. 2020 Jul 15;8(7):
pubmed: 32679918
Microbiol Resour Announc. 2018 Sep 27;7(12):
pubmed: 30533660
FEMS Yeast Res. 2019 Nov 1;19(7):
pubmed: 31605534
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Microbiol Resour Announc. 2019 Jan 24;8(4):
pubmed: 30701247
Genes (Basel). 2019 Jul 10;10(7):
pubmed: 31295964
Am J Hum Genet. 2007 Sep;81(3):559-75
pubmed: 17701901
Bioresour Technol. 2021 Dec;341:125877
pubmed: 34523574
FEMS Yeast Res. 2005 Apr;5(6-7):527-43
pubmed: 15780653
Genome Res. 2002 Jun;12(6):930-43
pubmed: 12045146
Genome Announc. 2016 Oct 6;4(5):
pubmed: 27795258
Metab Eng. 2015 May;29:36-45
pubmed: 25724340
J Gen Microbiol. 1968 Apr;51(1):115-26
pubmed: 5653223
ACS Synth Biol. 2021 Apr 16;10(4):884-896
pubmed: 33715363
ACS Sustain Chem Eng. 2022 Aug 22;10(33):10858-10869
pubmed: 36035440
NAR Genom Bioinform. 2021 Oct 14;3(4):lqab085
pubmed: 34661101
Nat Rev Genet. 2007 Dec;8(12):973-82
pubmed: 17984973
Biotechnol Bioeng. 2021 Aug;118(8):3117-3127
pubmed: 34009652
Mol Biol Evol. 2014 Jul;31(7):1929-36
pubmed: 24739305

Auteurs

Frédéric Bigey (F)

INRAE, Institut Agro, SPO, University Montpellier, 34060 Montpellier, France.

Emilie Pasteur (E)

Micalis, Université Paris-Saclay, INRAE, AgroParisTech, 78350 Jouy-en-Josas, France.

Xymena Połomska (X)

Department of Biotechnology & Food Microbiology, Wroclaw University of Environmental and Life Sciences (WUELS), 50-375 Wroclaw, Poland.

Stéphane Thomas (S)

Micalis, Université Paris-Saclay, INRAE, AgroParisTech, 78350 Jouy-en-Josas, France.

Anne-Marie Crutz-Le Coq (AM)

Micalis, Université Paris-Saclay, INRAE, AgroParisTech, 78350 Jouy-en-Josas, France.
IJPB, INRAE, 78000 Versailles, France.

Hugo Devillers (H)

INRAE, Institut Agro, SPO, University Montpellier, 34060 Montpellier, France.
Micalis, Université Paris-Saclay, INRAE, AgroParisTech, 78350 Jouy-en-Josas, France.

Cécile Neuvéglise (C)

INRAE, Institut Agro, SPO, University Montpellier, 34060 Montpellier, France.
Micalis, Université Paris-Saclay, INRAE, AgroParisTech, 78350 Jouy-en-Josas, France.

Classifications MeSH