An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach.

Biodiversity Environmental analysis Machine learning Network Statistical inference

Journal

Computational and structural biotechnology journal
ISSN: 2001-0370
Titre abrégé: Comput Struct Biotechnol J
Pays: Netherlands
ID NLM: 101585369

Informations de publication

Date de publication:
2023
Historique:
received: 13 10 2022
revised: 02 01 2023
accepted: 03 01 2023
entrez: 26 1 2023
pubmed: 27 1 2023
medline: 27 1 2023
Statut: epublish

Résumé

The natural world is constantly changing, and planetary boundaries are issuing severe warnings about biodiversity and cycles of carbon, nitrogen, and phosphorus. In other views, social problems such as global warming and food shortages are spreading to various fields. These seemingly unrelated issues are closely related, but it can be said that understanding them in an integrated manner is still a step away. However, progress in analytical technologies has been recognized in various fields and, from a microscopic perspective, with the development of instruments including next-generation sequencers (NGS), nuclear magnetic resonance (NMR), gas chromatography-mass spectrometry (GC/MS), and liquid chromatography-mass spectrometry (LC/MS), various forms of molecular information such as genome data, microflora structure, metabolome, proteome, and lipidome can be obtained. The development of new technology has made it possible to obtain molecular information in a variety of forms. From a macroscopic perspective, the development of environmental analytical instruments and environmental measurement facilities such as satellites, drones, observation ships, and semiconductor censors has increased the data availability for various environmental factors. Based on these background, the role of computational science is to provide a mechanism for integrating and understanding these seemingly disparate data sets. This review describes machine learning and the need for structural equations and statistical causal inference of these data to solve these problems. In addition to introducing actual examples of how these technologies can be utilized, we will discuss how to use these technologies to implement environmentally friendly technologies in society.

Identifiants

pubmed: 36698969
doi: 10.1016/j.csbj.2023.01.001
pii: S2001-0370(23)00001-6
pmc: PMC9860287
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

869-878

Informations de copyright

© 2023 The Author(s).

Déclaration de conflit d'intérêts

The authors declare that they have no known financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Hirokuni Miyamoto (H)

Graduate School of Horticulture, Chiba University, Matsudo, Chiba 271-8501, Japan.
RIKEN Center for Integrative Medical Science, Yokohama, Kanagawa 230-0045, Japan.
Sermas Co., Ltd., Ichikawa, Chiba 272-0033, Japan.
Japan Eco-science (Nikkan Kagaku) Co. Ltd., Chiba, Chiba 260-0034, Japan.
Graduate School of Medical Life Science, Yokohama City University, Tsurumi, Yokohama 230-0045, Japan.

Jun Kikuchi (J)

Graduate School of Medical Life Science, Yokohama City University, Tsurumi, Yokohama 230-0045, Japan.
RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan.

Classifications MeSH