BIONDA: a free database for a fast information on published biomarkers.
Journal
Bioinformatics advances
ISSN: 2635-0041
Titre abrégé: Bioinform Adv
Pays: England
ID NLM: 9918282081306676
Informations de publication
Date de publication:
2021
2021
Historique:
received:
26
03
2021
revised:
11
07
2021
entrez:
26
1
2023
pubmed:
18
8
2021
medline:
18
8
2021
Statut:
epublish
Résumé
Because of the steadily increasing and already manually unmanageable total number of biomarker-related articles in biomedical research, there is a need for intelligent systems that extract all relevant information from biomedical texts and provide it as structured information to researchers in a user-friendly way. To address this, BIONDA was implemented as a free text mining-based online database for molecular biomarkers including genes, proteins and miRNAs and for all kinds of diseases. The contained structured information on published biomarkers is extracted automatically from Europe PMC publication abstracts and high-quality sources like UniProt and Disease Ontology. This allows frequent content updates. BIONDA is freely accessible via a user-friendly web application at http://bionda.mpc.ruhr-uni-bochum.de. The current BIONDA code is available at GitHub via https://github.com/mpc-bioinformatics/bionda. Supplementary data are available at
Identifiants
pubmed: 36700097
doi: 10.1093/bioadv/vbab015
pii: vbab015
pmc: PMC9710600
doi:
Types de publication
Journal Article
Langues
eng
Pagination
vbab015Informations de copyright
© The Author(s) 2021. Published by Oxford University Press.
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