Bacterial communities in temperate and polar coastal sands are seasonally stable.


Journal

ISME communications
ISSN: 2730-6151
Titre abrégé: ISME Commun
Pays: England
ID NLM: 9918205372406676

Informations de publication

Date de publication:
28 Jun 2021
Historique:
received: 11 05 2021
accepted: 24 05 2021
revised: 13 05 2021
entrez: 5 2 2023
pubmed: 28 6 2021
medline: 28 6 2021
Statut: epublish

Résumé

Coastal sands are biocatalytic filters for dissolved and particulate organic matter of marine and terrestrial origin, thus, acting as centers of organic matter transformation. At high temporal resolution, we accessed the variability of benthic bacterial communities over two annual cycles at Helgoland (North Sea), and compared it with seasonality of communities in Isfjorden (Svalbard, 78°N) sediments, where primary production does not occur during winter. Benthic community structure remained stable in both, temperate and polar sediments on the level of cell counts and 16S rRNA-based taxonomy. Actinobacteriota of uncultured Actinomarinales and Microtrichales were a major group, with 8 ± 1% of total reads (Helgoland) and 31 ± 6% (Svalbard). Their high activity (frequency of dividing cells 28%) and in situ cell numbers of >10% of total microbes in Svalbard sediments, suggest Actinomarinales and Microtrichales as key heterotrophs for carbon mineralization. Even though Helgoland and Svalbard sampling sites showed no phytodetritus-driven changes of the benthic bacterial community structure, they harbored significantly different communities (p < 0.0001, r = 0.963). The temporal stability of benthic bacterial communities is in stark contrast to the dynamic succession typical of coastal waters, suggesting that pelagic and benthic bacterial communities respond to phytoplankton productivity very differently.

Identifiants

pubmed: 36739458
doi: 10.1038/s43705-021-00028-w
pii: 10.1038/s43705-021-00028-w
pmc: PMC9723697
doi:

Types de publication

Journal Article

Langues

eng

Pagination

29

Subventions

Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : EXC-2077-390741603

Informations de copyright

© 2021. The Author(s).

Références

Boudreau BP, Huettel M, Forster S, Jahnke RA, McLachlan A, Middelburg JJ, et al. Permeable marine sediments: overturning an old paradigm. Eos Trans AGU. 2001;82:133–6.
doi: 10.1029/EO082i011p00133-01
Huettel M, Berg P, Kostka JE. Benthic exchange and biogeochemical cycling in permeable sediments. Annu Rev Mar Sci. 2014;6:23–51.
doi: 10.1146/annurev-marine-051413-012706
Huettel M, Ziebis W, Forster S. Flow-induced uptake of particulate matter in permeable sediments. Limnol Oceanogr. 1996;41:309–22.
doi: 10.4319/lo.1996.41.2.0309
Huettel M, Rusch A. Transport and degradation of phytoplankton in permeable sediment. Limnol Oceanogr. 2000;45:534–49.
doi: 10.4319/lo.2000.45.3.0534
Rusch A, Forster S, Huettel M. Bacteria, diatoms and detritus in an intertidal sandflat subject to advective transport across the water-sediment interface. Biogeochemistry. 2001;55:1–27.
doi: 10.1023/A:1010687322291
Ahmerkamp S, Winter C, Krämer K, de Beer D, Janssen F, Friedrich J, et al. Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean. Limnol Oceanogr. 2017;62:1935–54.
doi: 10.1002/lno.10544
Jahnke RA Global Synthesis. In: Liu KK, Atkinson L, Quinones R, Talaue-McManus L, editors. Carbon and nutrient fluxes in continental margins. Ch. 16 Berlin: Springer; 2010.
Joiris C, Billen G, Lancelot C, Daro MH, Mommaerts JP, Bertels A, et al. A budget of carbon cycling in the Belgian coastal zone: relative roles of zooplankton, bacterioplankton and benthos in the utilization of primary production. Neth. J. Sea Res. 1982;16:260–75.
doi: 10.1016/0077-7579(82)90035-7
Jørgensen BB, Bang M, Blackburn TH. Anaerobic mineralization in marine-sediments from the Baltic-Sea-North Sea transition. Mar Ecol Prog Ser. 1990;59:39–54.
doi: 10.3354/meps059039
Middelburg JJ, Barranguet C, Boschker HTS, Herman PMJ, Moens T, Heip CHR. The fate of intertidal microphytobenthos carbon: an in situ
doi: 10.4319/lo.2000.45.6.1224
Böer SI, Arnosti C, van Beusekom JEE, Boetius A. Temporal variations in microbial activities and carbon turnover in subtidal sandy sediments. Biogeosciences. 2009;6:1149–65.
doi: 10.5194/bg-6-1149-2009
Goto N, Mitamura O, Terai H. Biodegradation of photosynthetically produced extracellular organic carbon from intertidal benthic algae. J Exp Mar Biol Ecol. 2001;257:73–86.
pubmed: 11165300 doi: 10.1016/S0022-0981(00)00329-4
Rusch A, Huettel M, Reimers CE, Taghon GL, Fuller CM. Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands. FEMS Microb Ecol. 2003;44:89–100.
doi: 10.1111/j.1574-6941.2003.tb01093.x
Hewson I, Vargo GA, Fuhrman JA. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microb Ecol. 2003;46:322–36.
pubmed: 14502411 doi: 10.1007/s00248-002-1067-3
Teske A, Durbin A, Ziervogel K, Cox C, Arnosti C. Microbial community composition and function in permanently cold seawater and sediments from an Arctic fjord of Svalbard. Appl Environ Microbiol. 2011;77:2008–18.
pubmed: 21257812 pmcid: 3067321 doi: 10.1128/AEM.01507-10
Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DBM, et al. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS ONE. 2011;6:e24570.
pubmed: 21931760 pmcid: 3169623 doi: 10.1371/journal.pone.0024570
Cardman Z, Arnosti C, Durbin A, Ziervogel K, Cox C, Steen AD, et al. Verrucomicrobia are candidates for polysaccharide-degrading bacterioplankton in an Arctic fjord of Svalbard. Appl Environ Microbiol. 2014;80:3749–56.
pubmed: 24727271 pmcid: 4054139 doi: 10.1128/AEM.00899-14
Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, Bennke CM, et al. Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science. 2012;336:608–11.
pubmed: 22556258 doi: 10.1126/science.1218344
Teeling H, Fuchs BM, Bennke CM, Kruger K, Chafee M, Kappelmann L, et al. Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. eLife. 2016;5:e11888.
pubmed: 27054497 pmcid: 4829426 doi: 10.7554/eLife.11888
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, Naeem S. Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA. 2006;103:13104–9.
pubmed: 16938845 pmcid: 1559760 doi: 10.1073/pnas.0602399103
Chafee M, Fernàndez-Guerra A, Buttigieg PL, Gerdts G, Eren AM, Teeling H, et al. Recurrent patterns of microdiversity in a temperate coastal marine environment. ISME J. 2018;12:237–52.
pubmed: 29064479 doi: 10.1038/ismej.2017.165
Mayer LM. Extracellular proteolytic enzyme activity in sediments of an intertidal mudflat. Limnol Oceanogr. 1989;34:973–81.
doi: 10.4319/lo.1989.34.6.0973
Middelburg J, Klaver G, Nieuwenhuize J, Wielemaker A, Haas W, Vlug T, et al. Organic matter mineralization in intertidal sediment along an estuarine gradient. Mar Ecol Prog Ser. 1996;132:157–68.
Tabuchi K, Kojima H, Fukui M. Seasonal changes in organic matter mineralization in a sublittoral sediment and temperature-driven decoupling of key processes. Microb Ecol. 2010;60:551–60.
pubmed: 20386897 doi: 10.1007/s00248-010-9659-9
Hoffmann K, Hassenrück C, Salman-Carvalho V, Holtappels M, Bienhold C. Response of bacterial communities to different detritus compositions in Arctic deep-sea sediments. Front Microbiol. 2017;8:266.
pubmed: 28286496 pmcid: 5323390 doi: 10.3389/fmicb.2017.00266
Gobet A, Boer SI, Huse SM, van Beusekom JEE, Quince C, Sogin ML, et al. Diversity and dynamics of rare and of resident bacterial populations in coastal sands. ISME J. 2012;6:542–53.
pubmed: 21975598 doi: 10.1038/ismej.2011.132
Mills HJ, Hunter E, Humphrys M, Kerkhof L, McGuinness L, Huettel M, et al. Characterization of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico. Appl Environ Microbiol. 2008;74:4440–53.
pubmed: 18487394 pmcid: 2493161 doi: 10.1128/AEM.02692-07
Probandt D, Knittel K, Tegetmeyer HE, Ahmerkamp S, Holtappels M, Amann R. Permeability shapes bacterial communities in sublittoral surface sediments. Environ Microbiol. 2017;19:1584–99.
pubmed: 28120371 doi: 10.1111/1462-2920.13676
Tait K, Airs RL, Widdicombe CE, Tarran GA, Jones MR, Widdicombe S. Dynamic responses of the benthic bacterial community at the Western English Channel observatory site L4 are driven by deposition of fresh phytodetritus. Prog Oceanogr. 2015;137:546–58.
doi: 10.1016/j.pocean.2015.04.020
Wiltshire K, Kraberg A, Bartsch I, Boersma M, Franke H-D, Freund J, et al. Helgoland Roads, North Sea: 45 years of change. Estuaries and Coasts. 2010;33:295–310.
doi: 10.1007/s12237-009-9228-y
Probandt D. Microbial ecology of subtidal sandy sediments [PhD thesis]. Bremen: University of Bremen; 2017.
Berge J, Renaud PE, Darnis G, Cottier F, Last K, Gabrielsen TM, et al. In the dark: a review of ecosystem processes during the Arctic polar night. Prog Oceanogr. 2015;139:258–71.
doi: 10.1016/j.pocean.2015.08.005
Boehnert S, Ruiz Soto S, Fox BRS, Yokoyama Y, Hebbeln D. Historic development of heavy metal contamination into the Firth of Thames, New Zealand. Geo-Mar Lett. 2020;40:149–65.
doi: 10.1007/s00367-019-00597-9
Lorenzen CJ. Determination of chlorophyll and pheo-pigments: spectrophotometric eqations. Limnol Oceanogr. 1967;12:343–6.
doi: 10.4319/lo.1967.12.2.0343
Zhou J, Bruns MA, Tiedje JM. DNA recovery from soils of diverse composition. Appl Environ Microbiol. 1996;62:316–22.
pubmed: 8593035 pmcid: 167800 doi: 10.1128/aem.62.2.316-322.1996
Herlemann DPR, Labrenz M, Jürgens K, Bertilsson S, Waniek JJ, Andersson AF. Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. ISME J. 2011;5:1571–9.
pubmed: 21472016 pmcid: 3176514 doi: 10.1038/ismej.2011.41
Bushnell B, Rood J, Singer E. BBMerge—accurate paired shotgun read merging via overlap. PLoS ONE. 2017;12:e0185056.
pubmed: 29073143 pmcid: 5657622 doi: 10.1371/journal.pone.0185056
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75:7537–41.
pubmed: 19801464 pmcid: 2786419 doi: 10.1128/AEM.01541-09
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41:D590–D596.
pubmed: 23193283 doi: 10.1093/nar/gks1219
Callahan BJ, McMurdie PJ, Holmes SP. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. ISME J. 2017;11:2639–43.
pubmed: 28731476 pmcid: 5702726 doi: 10.1038/ismej.2017.119
Oksanen J, Blanchet F, Friendly M, Kindt R, Legendre P, McGlinn D, et al. vegan: Community Ecology Package. R package version. 2019;2:5–6.
Team R.C. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.r-project.org/ ; 2019.
Wickham H, Averick M, Bryan J, Chang W, McGowan L, François R, et al. Welcome to the Tidyverse. J Open Source Softw. 2019;4:1686.
doi: 10.21105/joss.01686
Chapman MG, Underwood AJ. Ecological patterns in multivariate assemblages: information and interpretation of negative values in ANOSIM tests. Mar Ecol Prog Ser. 1999;180:257–65.
doi: 10.3354/meps180257
Pernthaler A, Pernthaler J, Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol. 2002;68:3094–101.
pubmed: 12039771 pmcid: 123953 doi: 10.1128/AEM.68.6.3094-3101.2002
Pernthaler J, Pernthaler A, Amann R. Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization. Appl Environ Microbiol. 2003;69:2631–7.
pubmed: 12732531 pmcid: 154506 doi: 10.1128/AEM.69.5.2631-2637.2003
Bennke CM, Reintjes G, Schattenhofer M, Ellrott A, Wulf J, Zeder M, et al. Modification of a high-throughput automatic microbial cell enumeration system for shipboard analyses. Appl Environ Microbiol. 2016;82:3289–96.
pubmed: 27016562 pmcid: 4959242 doi: 10.1128/AEM.03931-15
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, et al. ARB: a software environment for sequence data. Nucleic Acids Res. 2004;32:1363–71.
pubmed: 14985472 pmcid: 390282 doi: 10.1093/nar/gkh293
Snaidr J, Amann R, Huber I, Ludwig W, Schleifer K, Snaidr J, et al. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol. 1997;63:2884–96.
pubmed: 9212435 pmcid: 168584 doi: 10.1128/aem.63.7.2884-2896.1997
Bockelmann F-D, Puls W, Kleeberg U, Müller D, Emeis K-C. Mapping mud content and median grain-size of North Sea sediments—a geostatistical approach. Mar Geol. 2018;397:60–71.
doi: 10.1016/j.margeo.2017.11.003
Hoshino T, Doi H, Uramoto G-I, Wörmer L, Adhikari RR, Xiao N, et al. Global diversity of microbial communities in marine sediment. Proc Natl Acad Sci USA. 2020;117:27587–97.
pubmed: 33077589 pmcid: 7959581 doi: 10.1073/pnas.1919139117
Probandt D, Eickhorst T, Ellrott A, Amann R, Knittel K. Microbial life on a sand grain: from bulk sediment to single grains. ISME J. 2017;12:623.
pubmed: 29192905 pmcid: 5776476 doi: 10.1038/ismej.2017.197
Acosta-González A, Rosselló-Móra R, Marqués S. Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after the Prestige oil spill. Environ Microbiol. 2013;15:77–92.
pubmed: 22626032 doi: 10.1111/j.1462-2920.2012.02782.x
Tian F, Yu Y, Chen B, Li H, Yao Y-F, Guo X-K. Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis. Polar Biol. 2009;32:93–103.
doi: 10.1007/s00300-008-0509-x
Zeng Y, Zou Y, Grebmeier JM, He J, Zheng T. Culture-independent and culture-dependent methods to investigate the diversity of planktonic bacteria in the northern Bering Sea. Polar Biol. 2012;35:117–29.
doi: 10.1007/s00300-011-1044-8
Santelli CM, Orcutt BN, Banning E, Bach W, Moyer CL, Sogin ML, et al. Abundance and diversity of microbial life in ocean crust. Nature. 2008;453:653–6.
pubmed: 18509444 doi: 10.1038/nature06899
Ravenschlag K, Sahm K, Pernthaler J, Amann R. High bacterial diversity in permanently cold marine sediments. Appl Environ Microbiol. 1999;65:3982–9.
pubmed: 10473405 pmcid: 99730 doi: 10.1128/AEM.65.9.3982-3989.1999
Hunter EM, Mills HJ, Kostka JE. Microbial community diversity associated with carbon and nitrogen cycling in permeable shelf sediments. Appl Environ Microbiol. 2006;72:5689–701.
pubmed: 16957183 pmcid: 1563612 doi: 10.1128/AEM.03007-05
Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, et al. Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME J. 2016;10:1939–53.
pubmed: 26872043 pmcid: 4872838 doi: 10.1038/ismej.2015.257
Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, et al. Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean. ISME J. 2013;7:256–68.
pubmed: 23151638 doi: 10.1038/ismej.2012.108
Hodal H, Falk-Petersen S, Hop H, Kristiansen S, Reigstad M. Spring bloom dynamics in Kongsfjorden, Svalbard: nutrients, phytoplankton, protozoans and primary production. Polar Biol. 2012;35:191–203.
doi: 10.1007/s00300-011-1053-7
Jönsson BF, Salisbury JE, Mahadevan A. Large variability in continental shelf production of phytoplankton carbon revealed by satellite. Biogeosciences. 2011;8:1213–23.
doi: 10.5194/bg-8-1213-2011
Kuliński K, Kędra M, Legeżyńska J, Gluchowska M, Zaborska A. Particulate organic matter sinks and sources in high Arctic fjord. J Mar Syst. 2014;139:27–37.
doi: 10.1016/j.jmarsys.2014.04.018
Bourgeois S, Kerhervé P, Calleja ML, Many G, Morata N. Glacier inputs influence organic matter composition and prokaryotic distribution in a high Arctic fjord (Kongsfjorden, Svalbard). J Mar Syst. 2016;164:112–27.
doi: 10.1016/j.jmarsys.2016.08.009
Zaborska A, Włodarska-Kowalczuk M, Legeżyńska J, Jankowska E, Winogradow A, Deja K. Sedimentary organic matter sources, benthic consumption and burial in west Spitsbergen fjords—signs of maturing of Arctic fjordic systems? J Mar Syst. 2018;180:112–23.
doi: 10.1016/j.jmarsys.2016.11.005
McGovern M, Pavlov AK, Deininger A, Granskog MA, Leu E, Søreide JE, et al. Terrestrial inputs drive seasonality in organic matter and nutrient biogeochemistry in a high Arctic fjord system (Isfjorden, Svalbard). Front Mar Sci. 2020;7:747.
doi: 10.3389/fmars.2020.542563
Avci B, Krüger K, Fuchs BM, Teeling H, Amann RI. Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ISME J. 2020;14:1369–83.
pubmed: 32071394 pmcid: 7242417 doi: 10.1038/s41396-020-0601-y
Braeckman U, Janssen F, Lavik G, Elvert M, Marchant H, Buckner C, et al. Carbon and nitrogen turnover in the Arctic deep sea: in situ benthic community response to diatom and coccolithophorid phytodetritus. Biogeosciences. 2018;15:6537–57.
doi: 10.5194/bg-15-6537-2018
Guilini K, Oevelen DV, Soetaert K, Middelburg JJ, Vanreusela A. Nutritional importance of benthic bacteria for deep-sea nematodes from the Arctic ice margin: results of an isotope tracer experi5ment. Limnol Oceanogr. 2010;55:1977–89.
doi: 10.4319/lo.2010.55.5.1977
van Oevelen D, Soetaert K, Middelburg J, Herman P, Moodley L, Hamels I, et al. Carbon flows through a benthic food web: Integrating biomass, isotope and tracer data. J Mar Res. 2006;64:453–82.
doi: 10.1357/002224006778189581
Danovaro R, Dell’Anno A, Corinaldesi C, Magagnini M, Noble R, Tamburini C. et al. Major viral impact on the functioning of benthic deep-sea ecosystems. Nature. 2008;454:1084–7.
pubmed: 18756250 doi: 10.1038/nature07268
Miller DC. Abrasion effects on microbes in sandy sediments. Mar Ecol Prog Ser. 1989;55:73–82.
doi: 10.3354/meps055073
Ahmerkamp S, Marchant HK, Peng C, Probandt D, Littmann S, Kuypers MM. et al. The effect of sediment grain properties and porewater flow on microbial abundance and respiration in permeable sediments. Sci. Rep. 2020;10:3573
pubmed: 32107429 pmcid: 7046789 doi: 10.1038/s41598-020-60557-7
Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Klenk HP. et al. Taxonomy, physiology, and natural products of Actinobacteria. Microbiol Mol Biol Rev. 2016;80:1–43.
pubmed: 26609051 doi: 10.1128/MMBR.00019-15
Schrempf H. Actinobacteria within soils: capacities for mutualism, symbiosis and pathogenesis. FEMS Microbiol Lett. 2013;342:77–78.
pubmed: 23611473 doi: 10.1111/1574-6968.12147
Giovannoni SJ, Stingl U. Molecular diversity and ecology of microbial plankton. Nature. 2005;437:343–8.
pubmed: 16163344 doi: 10.1038/nature04158
Yilmaz P, Iversen MH, Hankeln W, Kottmann R, Quast C, Glöckner FO. Ecological structuring of bacterial and archaeal taxa in surface ocean waters. FEMS Microbiol Ecol. 2012;81:373–85.
pubmed: 22416918 doi: 10.1111/j.1574-6941.2012.01357.x
Bienhold C, Zinger L, Boetius A, Ramette A. Diversity and biogeography of bathyal and abyssal seafloor bacteria. PLoS ONE. 2016;11:e0148016.
pubmed: 26814838 pmcid: 4731391 doi: 10.1371/journal.pone.0148016
Rappé MS, Kemp PF, Giovannoni SJ. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol Oceanogr. 1997;42:811–26.
doi: 10.4319/lo.1997.42.5.0811
Zeng Y-X, Yu Y, Li H-R, Luo W. Prokaryotic community composition in Arctic Kongsfjorden and sub-arctic northern Bering Sea sediments as revealed by 454 pyrosequencing. Front Microbiol. 2017;8:2498.
pubmed: 29312204 pmcid: 5732994 doi: 10.3389/fmicb.2017.02498
Fang X-M, Zhang T, Li J, Wang NF, Wang Z, Yu LY. Bacterial community pattern along the sediment seafloor of the Arctic fjorden (Kongsfjorden, Svalbard). Antonie Van Leeuwenhoek. 2019;112:1121–36.
pubmed: 30783849 doi: 10.1007/s10482-019-01245-z
Ziemert N, Lechner A, Wietz M, Millán-Aguiñaga N, Chavarria KL, Jensen PR. et al. Diversity and evolution of secondary metabolism in the marine actinomycete genus salinispora. Proc Natl Acad Sci USA. 2014;111:e1130–1139.
pubmed: 24616526 pmcid: 3970525 doi: 10.1073/pnas.1324161111
Manivasagan P, Venkatesan J, Sivakumar K, Kim SK. Pharmaceutically active secondary metabolites of marine actinobacteria. Microbiol Res. 2014;169:262–78.
pubmed: 23958059 doi: 10.1016/j.micres.2013.07.014
Kamjam M, Sivalingam P, Deng Z, Hong K. Deep sea Actinomycetes and their secondary metabolites. Front Microbiol. 2017;8:760.
pubmed: 28507537 pmcid: 5410581 doi: 10.3389/fmicb.2017.00760
Lewin GR, Carlos C, Chevrette MG, Horn HA, McDonald BR, Stankey RJ. et al. Evolution and ecology of Actinobacteria and their bioenergy applications. Annu Rev Microbiol. 2016;70:235–54.
pubmed: 27607553 pmcid: 5703056 doi: 10.1146/annurev-micro-102215-095748
Matsumoto A, Kasai H, Matsuo Y, Ōmura S, Shizuri Y, Takahashi Y. Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary. J Gen Appl Microbiol. 2009;55:201–5.
pubmed: 19590147 doi: 10.2323/jgam.55.201
Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F. Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria. Sci Rep. 2013;3:2471.
pubmed: 23959135 pmcid: 3747508 doi: 10.1038/srep02471
El Kaoutari A, Armougom F, Gordon J, Raoult D, Henrissat B. The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nat Rev Microbiol. 2013;11:497–504.
Berlemont R, Martiny AC. Glycoside hydrolases across environmental microbial communities. PLoS Comp. Biol. 2016;12:e1005300.
doi: 10.1371/journal.pcbi.1005300
Becker S, Tebben J, Coffinet S, Wiltshire K, Iversen MH, Harder T, et al. Laminarin is a major molecule in the marine carbon cycle. Proc Natl Acad Sci USA. 2020;117:6599–607.
pubmed: 32170018 pmcid: 7104365 doi: 10.1073/pnas.1917001117
Coutinho MCL, Teixeira VL, Santos CSG. A review of “Polychaeta” chemicals and their possible ecological role. J Chem Ecol. 2018;44:72–94.
pubmed: 29273953 doi: 10.1007/s10886-017-0915-z
Arnosti C. Functional differences between Arctic seawater and sedimentary microbial communities: contrasts in microbial hydrolysis of complex substrates. FEMS Microbiol Ecol. 2008;66:343–51.
pubmed: 18778275 doi: 10.1111/j.1574-6941.2008.00587.x
Krüger K, Chafee M, Francis TB, Del Rio TG, Becher D, Schweder T, et al. In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. ISME J. 2019;13:2800–16.
pubmed: 31316134 pmcid: 6794258 doi: 10.1038/s41396-019-0476-y
Reintjes G, Arnosti C, Fuchs BM, Amann R. An alternative polysaccharide uptake mechanism of marine bacteria. ISME J. 2017;11:1640–50.
pubmed: 28323277 pmcid: 5520146 doi: 10.1038/ismej.2017.26
Arnosti C, Jørgensen BB. High activity and low temperature optima of extracellular enzymes in Arctic sediments: implications for carbon cycling by heterotrophic microbial communities. Mar Ecol Prog Ser. 2003;249:15–24.
doi: 10.3354/meps249015
Arnosti C, Jørgensen BB. Organic carbon degradation in Arctic marine sediments, Svalbard: a comparison of initial and terminal steps. Geomicrobiol J. 2006;23:551–63.
doi: 10.1080/01490450600897336

Auteurs

Sebastian Miksch (S)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Mirja Meiners (M)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Anke Meyerdierks (A)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

David Probandt (D)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Gunter Wegener (G)

Max Planck Institute for Marine Microbiology, Bremen, Germany.
MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany.

Jürgen Titschack (J)

MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Senckenberg am Meer, Wilhelmshaven, Germany.

Maria A Jensen (MA)

UNIS, The University Centre in Svalbard, Longyearbyen, Norway.

Andreas Ellrott (A)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Rudolf Amann (R)

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Katrin Knittel (K)

Max Planck Institute for Marine Microbiology, Bremen, Germany. kknittel@mpi-bremen.de.

Classifications MeSH