Human-gained heart enhancers are associated with species-specific cardiac attributes.


Journal

Nature cardiovascular research
ISSN: 2731-0590
Titre abrégé: Nat Cardiovasc Res
Pays: England
ID NLM: 9918284280206676

Informations de publication

Date de publication:
Sep 2022
Historique:
entrez: 23 2 2023
pubmed: 24 2 2023
medline: 24 2 2023
Statut: ppublish

Résumé

The heart, a vital organ which is first to develop, has adapted its size, structure and function in order to accommodate the circulatory demands for a broad range of animals. Although heart development is controlled by a relatively conserved network of transcriptional/chromatin regulators, how the human heart has evolved species-specific features to maintain adequate cardiac output and function remains to be defined. Here, we show through comparative epigenomic analysis the identification of enhancers and promoters that have gained activity in humans during cardiogenesis. These cis-regulatory elements (CREs) are associated with genes involved in heart development and function, and may account for species-specific differences between human and mouse hearts. Supporting these findings, genetic variants that are associated with human cardiac phenotypic/disease traits, particularly those differing between human and mouse, are enriched in human-gained CREs. During early stages of human cardiogenesis, these CREs are also gained within genomic loci of transcriptional regulators, potentially expanding their role in human heart development. In particular, we discovered that gained enhancers in the locus of the early human developmental regulator

Identifiants

pubmed: 36817700
doi: 10.1038/s44161-022-00124-7
pmc: PMC9937543
mid: NIHMS1851695
doi:

Types de publication

Journal Article

Langues

eng

Pagination

830-843

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM134366
Pays : United States
Organisme : NICHD NIH HHS
ID : R01 HD103278
Pays : United States
Organisme : NHLBI NIH HHS
ID : UM1 HL128773
Pays : United States

Déclaration de conflit d'intérêts

Ethics declarations The authors declare no competing interests.

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Auteurs

Eugin Destici (E)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Fugui Zhu (F)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Shaina Tran (S)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Sebastian Preissl (S)

Ludwig Institute for Cancer Research, La Jolla, CA, 92093, USA.
Center for Epigenomics, University of California, San Diego, La Jolla, CA, 92093, USA.

Elie N Farah (EN)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Yanxiao Zhang (Y)

Ludwig Institute for Cancer Research, La Jolla, CA, 92093, USA.

Xiameng Hou (X)

Center for Epigenomics, University of California, San Diego, La Jolla, CA, 92093, USA.

Olivier B Poirion (OB)

Center for Epigenomics, University of California, San Diego, La Jolla, CA, 92093, USA.

Ah Young Lee (AY)

Ludwig Institute for Cancer Research, La Jolla, CA, 92093, USA.

Jonathan D Grinstein (JD)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Joshua Bloomekatz (J)

Department of Biology, University of Mississippi.

Hong Sook Kim (HS)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Robert Hu (R)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Sylvia M Evans (SM)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.
Department of Pharmacology, University of California, San Diego, La Jolla, CA, 92093, USA.

Bing Ren (B)

Ludwig Institute for Cancer Research, La Jolla, CA, 92093, USA.
Center for Epigenomics, University of California, San Diego, La Jolla, CA, 92093, USA.
Institute of Genomic Medicine, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Moores Cancer Center, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Chris Benner (C)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Neil C Chi (NC)

Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Institute of Genomic Medicine, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.

Classifications MeSH