Unified Topological Inference for Brain Networks in Temporal Lobe Epilepsy Using the Wasserstein Distance.


Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
20 Sep 2023
Historique:
pubmed: 25 2 2023
medline: 25 2 2023
entrez: 24 2 2023
Statut: epublish

Résumé

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.

Identifiants

pubmed: 36824424
pii: 2302.06673
pmc: PMC9949148
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIBIB NIH HHS
ID : R01 EB028753
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS117568
Pays : United States
Organisme : NINDS NIH HHS
ID : U01 NS093650
Pays : United States

Commentaires et corrections

Type : UpdateIn

Auteurs

Moo K Chung (MK)

Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, USA.

Camille Garcia Ramos (CG)

Department of Neurology, University of Wisconsin-Madison, USA.

Felipe Branco De Paiva (FB)

Department of Neurology, University of Wisconsin-Madison, USA.

Jedidiah Mathis (J)

Department of Neurology, Medical College of Wisconsin, USA.

Vivek Prabharakaren (V)

Department of Radiology, University of Wisconsin-Madison, USA.

Veena A Nair (VA)

Department of Radiology, University of Wisconsin-Madison, USA.

Elizabeth Meyerand (E)

Departments of Medical Physics & Biomedical Engineering, University of Wisconsin-Madison, USA.

Bruce P Hermann (BP)

Department of Neurology, University of Wisconsin-Madison, USA.

Jeffrey R Binder (JR)

Department of Neurology, Medical College of Wisconsin, USA.

Aaron F Struck (AF)

Department of Neurology, University of Wisconsin-Madison, USA.

Classifications MeSH