Metabolome-Based Classification of Snake Venoms by Bioinformatic Tools.


Journal

Toxins
ISSN: 2072-6651
Titre abrégé: Toxins (Basel)
Pays: Switzerland
ID NLM: 101530765

Informations de publication

Date de publication:
15 02 2023
Historique:
received: 15 12 2022
revised: 31 01 2023
accepted: 10 02 2023
entrez: 24 2 2023
pubmed: 25 2 2023
medline: 3 3 2023
Statut: epublish

Résumé

Snakebite is considered a neglected tropical disease, and it is one of the most intricate ones. The variability found in snake venom is what makes it immensely complex to study. These variations are present both in the big and the small molecules found in snake venom. This study focused on examining the variability found in the venom's small molecules (i.e., mass range of 100-1000 Da) between two main families of venomous snakes-Elapidae and Viperidae-managing to create a model able to classify unknown samples by means of specific features, which can be extracted from their LC-MS data and output in a comprehensive list. The developed model also allowed further insight into the composition of snake venom by highlighting the most relevant metabolites of each group by clustering similarly composed venoms. The model was created by means of support vector machines and used 20 features, which were merged into 10 principal components. All samples from the first and second validation data subsets were correctly classified. Biological hypotheses relevant to the variation regarding the metabolites that were identified are also given.

Identifiants

pubmed: 36828475
pii: toxins15020161
doi: 10.3390/toxins15020161
pmc: PMC9963137
pii:
doi:

Substances chimiques

Snake Venoms 0
Elapid Venoms 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Wellcome Trust
ID : 221712/Z/20/Z
Pays : United Kingdom

Références

Toxins (Basel). 2017 Mar 13;9(3):
pubmed: 28335411
J Venom Anim Toxins Incl Trop Dis. 2017 Aug 8;23:38
pubmed: 28804495
Toxins (Basel). 2018 Sep 26;10(10):
pubmed: 30261630
Toxicon. 1993 Jul;31(7):889-99
pubmed: 8212033
Biomed Biochim Acta. 1991;50(4-6):769-73
pubmed: 1801754
Biochem Biophys Res Commun. 1998 Jul 30;248(3):562-8
pubmed: 9703966
J Proteome Res. 2008 Aug;7(8):3556-71
pubmed: 18557640
Nat Rev Dis Primers. 2017 Sep 14;3:17063
pubmed: 28905944
PLoS Negl Trop Dis. 2020 Jan 30;14(1):e0008001
pubmed: 31999732
Nucleic Acids Res. 2022 Jan 7;50(D1):D622-D631
pubmed: 34986597
Metabolites. 2019 Dec 21;10(1):
pubmed: 31877765
Metabolites. 2020 Jul 11;10(7):
pubmed: 32664469
Philos Trans A Math Phys Eng Sci. 2016 Apr 13;374(2065):20150202
pubmed: 26953178
Science. 2021 Jan 22;371(6527):386-390
pubmed: 33479150
Trends Ecol Evol. 2013 Apr;28(4):219-29
pubmed: 23219381
Toxins (Basel). 2016 Dec 30;9(1):
pubmed: 28042812
J Pharmacol Toxicol Methods. 2011 Mar-Apr;63(2):137-42
pubmed: 20849965
Br J Haematol. 2017 Jun;177(6):947-959
pubmed: 28233897
Toxins (Basel). 2018 Apr 26;10(5):
pubmed: 29701671
Toxicon. 1998 Dec;36(12):1801-6
pubmed: 9839664
PLoS Negl Trop Dis. 2011 Apr 12;5(4):e1018
pubmed: 21532748
NDT Plus. 2009 Feb;2(1):11-9
pubmed: 25949276
Mol Cell Proteomics. 2008 Feb;7(2):215-46
pubmed: 17855442
Toxins (Basel). 2016 Sep 26;8(10):
pubmed: 27681740
Front Oncol. 2018 Apr 23;8:126
pubmed: 29740540
Anal Chem. 2019 Aug 20;91(16):10800-10807
pubmed: 31356049
Toxins (Basel). 2017 Sep 18;9(9):
pubmed: 28927001
J Zool (1987). 2013 Apr;289(4):270-278
pubmed: 23853424
J Proteomics. 2019 Jan 16;191:153-165
pubmed: 29462664
Toxicon. 2018 Sep 15;152:60-64
pubmed: 30053438
Multivariate Behav Res. 1966 Apr 1;1(2):245-76
pubmed: 26828106

Auteurs

Luis L Alonso (LL)

Division of BioAnalytical Chemistry, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.
Centre for Analytical Sciences Amsterdam (CASA), 1012 WX Amsterdam, The Netherlands.

Julien Slagboom (J)

Division of BioAnalytical Chemistry, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.
Centre for Analytical Sciences Amsterdam (CASA), 1012 WX Amsterdam, The Netherlands.

Nicholas R Casewell (NR)

Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.

Saer Samanipour (S)

Van 't Hof Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.

Jeroen Kool (J)

Division of BioAnalytical Chemistry, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.
Centre for Analytical Sciences Amsterdam (CASA), 1012 WX Amsterdam, The Netherlands.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH