Explainable AI for unveiling deep learning pollen classification model based on fusion of scattered light patterns and fluorescence spectroscopy.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
24 02 2023
Historique:
received: 04 09 2022
accepted: 15 02 2023
entrez: 24 2 2023
pubmed: 25 2 2023
medline: 3 3 2023
Statut: epublish

Résumé

Pollen monitoring have become data-intensive in recent years as real-time detectors are deployed to classify airborne pollen grains. Machine learning models with a focus on deep learning, have an essential role in the pollen classification task. Within this study we developed an explainable framework to unveil a deep learning model for pollen classification. Model works on data coming from single particle detector (Rapid-E) that records for each particle optical fingerprint with scattered light and laser induced fluorescence. Morphological properties of a particle are sensed with the light scattering process, while chemical properties are encoded with fluorescence spectrum and fluorescence lifetime induced by high-resolution laser. By utilizing these three data modalities, scattering, spectrum, and lifetime, deep learning-based models with millions of parameters are learned to distinguish different pollen classes, but a proper understanding of such a black-box model decisions demands additional methods to employ. Our study provides the first results of applied explainable artificial intelligence (xAI) methodology on the pollen classification model. Extracted knowledge on the important features that attribute to the predicting particular pollen classes is further examined from the perspective of domain knowledge and compared to available reference data on pollen sizes, shape, and laboratory spectrofluorometer measurements.

Identifiants

pubmed: 36828900
doi: 10.1038/s41598-023-30064-6
pii: 10.1038/s41598-023-30064-6
pmc: PMC9958198
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3205

Informations de copyright

© 2023. The Author(s).

Références

IEEE Rev Biomed Eng. 2022 Jun 23;PP:
pubmed: 35737637
Environ Res. 2020 Dec;191:110031
pubmed: 32814105
IEEE Trans Med Imaging. 2022 Apr;41(4):757-770
pubmed: 32881682
Sci Rep. 2021 Feb 25;11(1):4565
pubmed: 33633172
Allergy. 2014 Oct;69(10):1275-9
pubmed: 24965386
Sci Total Environ. 2022 Dec 10;851(Pt 2):158234
pubmed: 36007635
Sci Total Environ. 2021 Nov 20;796:148932
pubmed: 34273827
BMC Bioinformatics. 2022 Jan 20;22(Suppl 12):443
pubmed: 35057748
Plant Physiol Biochem. 2021 Apr;161:176-190
pubmed: 33618201
Allergy. 2007 Sep;62(9):976-90
pubmed: 17521313
Sci Rep. 2022 Mar 22;12(1):4849
pubmed: 35318372
PLoS One. 2021 Mar 11;16(3):e0247284
pubmed: 33705418
Nat Mach Intell. 2020 Jan;2(1):56-67
pubmed: 32607472
Clin Transl Allergy. 2021 May;11(3):e12015
pubmed: 33934521
J Cheminform. 2023 Jan 6;15(1):2
pubmed: 36609340
Rev Sci Instrum. 2013 Mar;84(3):033302
pubmed: 23556810
ACS Sens. 2022 Dec 23;7(12):3885-3894
pubmed: 36414385

Auteurs

Sanja Brdar (S)

BioSense Institute - Research Institute for Information Technologies in Biosystems, University of Novi Sad, Novi Sad, Serbia. sanja.brdar@biosense.rs.

Marko Panić (M)

BioSense Institute - Research Institute for Information Technologies in Biosystems, University of Novi Sad, Novi Sad, Serbia.

Predrag Matavulj (P)

BioSense Institute - Research Institute for Information Technologies in Biosystems, University of Novi Sad, Novi Sad, Serbia.

Mira Stanković (M)

Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia.

Dragana Bartolić (D)

Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia.

Branko Šikoparija (B)

BioSense Institute - Research Institute for Information Technologies in Biosystems, University of Novi Sad, Novi Sad, Serbia.

Articles similaires

Databases, Protein Protein Domains Protein Folding Proteins Deep Learning
Humans Artificial Intelligence COVID-19 SARS-CoV-2 Pandemics
Humans Algorithms Software Artificial Intelligence Computer Simulation

Classifications MeSH