Robust Bioinformatics Approaches Result in the First Polygenic Risk Score for BMI in Greek Adults.
Greek adults
bioinformatics
body mass index (BMI)
polygenic risk score (PRS)
Journal
Journal of personalized medicine
ISSN: 2075-4426
Titre abrégé: J Pers Med
Pays: Switzerland
ID NLM: 101602269
Informations de publication
Date de publication:
14 Feb 2023
14 Feb 2023
Historique:
received:
23
12
2022
revised:
29
01
2023
accepted:
10
02
2023
entrez:
25
2
2023
pubmed:
26
2
2023
medline:
26
2
2023
Statut:
epublish
Résumé
Quantifying the role of genetics via construction of polygenic risk scores (PRSs) is deemed a resourceful tool to enable and promote effective obesity prevention strategies. The present paper proposes a novel methodology for PRS extraction and presents the first PRS for body mass index (BMI) in a Greek population. A novel pipeline for PRS derivation was used to analyze genetic data from a unified database of three cohorts of Greek adults. The pipeline spans various steps of the process, from iterative dataset splitting to training and test partitions, calculation of summary statistics and PRS extraction, up to PRS aggregation and stabilization, achieving higher evaluation metrics. Using data from 2185 participants, implementation of the pipeline enabled consecutive repetitions in splitting training and testing samples and resulted in a 343-single nucleotide polymorphism PRS yielding an R
Identifiants
pubmed: 36836561
pii: jpm13020327
doi: 10.3390/jpm13020327
pmc: PMC9960517
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Greek Secretariat for Research and Technology
ID : "Obesity and metabolic syndrome: dietary intervention with Greek raisins in NAFLD/NASH. Investigation of molecular mechanisms", approved by the Greek Secretariat for Research and Technology (Cooperation 890/2009)
Organisme : IKY/SIEMENS
ID : Research Project for Excellence IKY/SIEMENS
Organisme : Hellenic Society for the Study of Bone Metabolism
ID : Hellenic Society for the Study of Bone Metabolism research grant
Organisme : General Secretary of Research and Technology
ID : (PENED 03EΔ474)
Organisme : Targeted Financing from the Estonian Ministry of Education and Research
ID : SF0180142s08
Organisme : EU FP7 grant ECOGENE
ID : (#205419
Organisme : European Union
ID : European Regional Development Fund grant to the Centre of Excellence in Genomics, Estonian Biocentre and University of Tartu
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