Robust Bioinformatics Approaches Result in the First Polygenic Risk Score for BMI in Greek Adults.

Greek adults bioinformatics body mass index (BMI) polygenic risk score (PRS)

Journal

Journal of personalized medicine
ISSN: 2075-4426
Titre abrégé: J Pers Med
Pays: Switzerland
ID NLM: 101602269

Informations de publication

Date de publication:
14 Feb 2023
Historique:
received: 23 12 2022
revised: 29 01 2023
accepted: 10 02 2023
entrez: 25 2 2023
pubmed: 26 2 2023
medline: 26 2 2023
Statut: epublish

Résumé

Quantifying the role of genetics via construction of polygenic risk scores (PRSs) is deemed a resourceful tool to enable and promote effective obesity prevention strategies. The present paper proposes a novel methodology for PRS extraction and presents the first PRS for body mass index (BMI) in a Greek population. A novel pipeline for PRS derivation was used to analyze genetic data from a unified database of three cohorts of Greek adults. The pipeline spans various steps of the process, from iterative dataset splitting to training and test partitions, calculation of summary statistics and PRS extraction, up to PRS aggregation and stabilization, achieving higher evaluation metrics. Using data from 2185 participants, implementation of the pipeline enabled consecutive repetitions in splitting training and testing samples and resulted in a 343-single nucleotide polymorphism PRS yielding an R

Identifiants

pubmed: 36836561
pii: jpm13020327
doi: 10.3390/jpm13020327
pmc: PMC9960517
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Greek Secretariat for Research and Technology
ID : "Obesity and metabolic syndrome: dietary intervention with Greek raisins in NAFLD/NASH. Investigation of molecular mechanisms", approved by the Greek Secretariat for Research and Technology (Cooperation 890/2009)
Organisme : IKY/SIEMENS
ID : Research Project for Excellence IKY/SIEMENS
Organisme : Hellenic Society for the Study of Bone Metabolism
ID : Hellenic Society for the Study of Bone Metabolism research grant
Organisme : General Secretary of Research and Technology
ID : (PENED 03EΔ474)
Organisme : Targeted Financing from the Estonian Ministry of Education and Research
ID : SF0180142s08
Organisme : EU FP7 grant ECOGENE
ID : (#205419
Organisme : European Union
ID : European Regional Development Fund grant to the Centre of Excellence in Genomics, Estonian Biocentre and University of Tartu

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Auteurs

Maria Kafyra (M)

Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University, 17671 Athens, Greece.

Ioanna Panagiota Kalafati (IP)

Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University, 17671 Athens, Greece.
Department of Nutrition and Dietetics, School of Physical Education, Sport Science and Dietetics, University of Thessaly, 42132 Trikala, Greece.

Maria Dimitriou (M)

Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University, 17671 Athens, Greece.
Department of Nutritional Science and Dietetics, School of Health Science, University of the Peloponnese, Antikalamos, 24100 Kalamata, Greece.

Effimia Grigoriou (E)

Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University, 17671 Athens, Greece.

Alexandros Kokkinos (A)

First Department of Propaedeutic and Internal Medicine, Laiko General Hospital, Athens University Medical School, 11527 Athens, Greece.

Loukianos Rallidis (L)

Second Department of Cardiology, Medical School, National and Kapodistrian University of Athens, Attikon Hospital, 12462 Athens, Greece.

Genovefa Kolovou (G)

Cardiometabolic Center, Metropolitan Hospital, 18547 Piraeus, Greece.

Georgios Trovas (G)

Laboratory for the Research of Musculoskeletal System "Th. Garofalidis", School of Medicine, National and Kapodistrian University of Athens, KAT General Hospital, Athinas 10th Str., 14561 Athens, Greece.

Eirini Marouli (E)

William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London EC1M 6BQ, UK.

Panos Deloukas (P)

William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London EC1M 6BQ, UK.

Panagiotis Moulos (P)

Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center 'Alexander Fleming', 16672 Vari, Greece.

George V Dedoussis (GV)

Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University, 17671 Athens, Greece.
Genome Analysis, 17671 Athens, Greece.

Classifications MeSH