Whole-Genome Sequences of a Lactobacillus melliventris Strain and Its

Journal

Microbiology resource announcements
ISSN: 2576-098X
Titre abrégé: Microbiol Resour Announc
Pays: United States
ID NLM: 101728794

Informations de publication

Date de publication:
16 Mar 2023
Historique:
pubmed: 26 2 2023
medline: 26 2 2023
entrez: 25 2 2023
Statut: ppublish

Résumé

The complete genome sequence of Lactobacillus melliventris strain IBH004, isolated from the gut of a honeybee worker (Apis mellifera) and containing two plasmids and a temperate phage, was determined using hybrid assembly of Oxford Nanopore and Illumina reads. Phage-sequence relationships were identified from the coding sequences, and a proteomic tree was constructed.

Identifiants

DOI: 10.1128/mra.00036-23 PMID: 36840591 PMC: PMC10019154
pubmed: 36840591
doi: 10.1128/mra.00036-23
pmc: PMC10019154
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e0003623

Subventions

Organisme : Ricola Foundation
ID : REF-38-899
Organisme : UB | Institute of Veterinary Bacteriology, University of Bern (IVB)
ID : REF-660-50

Références

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52
pubmed: 21672955
Environ Microbiol. 2015 Mar;17(3):796-815
pubmed: 24905222
Nat Biotechnol. 2019 May;37(5):540-546
pubmed: 30936562
Nucleic Acids Res. 2022 Jan 7;50(D1):D801-D807
pubmed: 34634793
J Invertebr Pathol. 2021 Jan;178:107521
pubmed: 33347864
Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21
pubmed: 27141966
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802
pubmed: 35073327
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286
pubmed: 28204908
Genome Biol. 2019 Jun 24;20(1):129
pubmed: 31234903
Int J Syst Evol Microbiol. 2018 Jan;68(1):461-466
pubmed: 29292687
Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11509-14
pubmed: 25053814
Bioinformatics. 2011 Mar 15;27(6):863-4
pubmed: 21278185
PLoS One. 2012;7(3):e33188
pubmed: 22427985
BMC Genomics. 2014 Nov 27;15:1027
pubmed: 25428721
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24
pubmed: 27342282
BMC Genomics. 2015 Apr 11;16:284
pubmed: 25880915
Bioinformatics. 2017 Aug 01;33(15):2379-2380
pubmed: 28379287
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296
pubmed: 33885785
Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42
pubmed: 23193287
Genome Biol. 2015 Dec 29;16:294
pubmed: 26714481

Auteurs

Andrew F Brown (AF)

Institute of Bee Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Graduate School of Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.

Judith Pfister (J)

Institute of Bee Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Javier E Fernandez (JE)

Graduate School of Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.
Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Valentina Donà (V)

Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Victor Rodriguez (V)

Institute of Bee Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Gina Retschnig (G)

Institute of Bee Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Alexandra Collaud (A)

Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Peter Neumann (P)

Institute of Bee Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

Vincent Perreten (V)

Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
ORCID: 0000-0001-5722-9445

Classifications MeSH