Identification of a prototype human gut
RNA sequencing
bifidobacteria
host–microbe interactions
inflammation
intestinal barrier
microbe-microbe interactions
probiotics
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2023
2023
Historique:
received:
23
12
2022
accepted:
17
01
2023
entrez:
27
2
2023
pubmed:
28
2
2023
medline:
28
2
2023
Statut:
epublish
Résumé
Bifidobacteria are extensively exploited for the formulation of probiotic food supplements due to their claimed ability to exert health-beneficial effects upon their host. However, most commercialized probiotics are tested and selected for their safety features rather than for their effective abilities to interact with the host and/or other intestinal microbial players. In this study, we applied an ecological and phylogenomic-driven selection to identify novel
Identifiants
pubmed: 36846784
doi: 10.3389/fmicb.2023.1130592
pmc: PMC9945282
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1130592Informations de copyright
Copyright © 2023 Alessandri, Fontana, Tarracchini, Rizzo, Bianchi, Taurino, Chiu, Lugli, Mancabelli, Argentini, Longhi, Anzalone, Viappiani, Milani, Turroni, Bussolati, van Sinderen and Ventura.
Déclaration de conflit d'intérêts
FF, GL, RA, and AV were employed by GenProbio Srl. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationship that could be construed as potential conflict of interest.
Références
Bioinformatics. 2012 Feb 1;28(3):416-8
pubmed: 22130594
Nat Microbiol. 2018 Jan;3(1):8-16
pubmed: 29255284
J Bacteriol. 2022 Jun 21;204(6):e0008422
pubmed: 35612303
PLoS One. 2014 Feb 05;9(2):e88260
pubmed: 24505453
Benef Microbes. 2018 Sep 18;9(5):761-773
pubmed: 29726281
Appl Environ Microbiol. 2017 Sep 15;83(19):
pubmed: 28754709
Bioinformatics. 2015 Jan 15;31(2):166-9
pubmed: 25260700
Probiotics Antimicrob Proteins. 2023 Feb;15(1):63-73
pubmed: 34558015
Front Microbiol. 2016 Jun 28;7:979
pubmed: 27446020
Appl Environ Microbiol. 2014 Sep;80(17):5161-9
pubmed: 24951779
Anaerobe. 2013 Jun;21:9-17
pubmed: 23523946
J Agric Food Chem. 2022 Sep 21;70(37):11678-11688
pubmed: 36095239
Cell Mol Life Sci. 2018 Jan;75(1):103-118
pubmed: 28983638
Int J Syst Evol Microbiol. 2022 May;72(5):
pubmed: 35608970
Appl Environ Microbiol. 2017 Sep 15;83(19):
pubmed: 28778891
Gut Microbes. 2012 Sep-Oct;3(5):420-5
pubmed: 22713271
Appl Environ Microbiol. 2020 Sep 17;86(19):
pubmed: 32737132
Bioinformatics. 2013 Oct 1;29(19):2487-9
pubmed: 23842809
Appl Environ Microbiol. 2022 Mar 22;88(6):e0218721
pubmed: 35108084
J Antimicrob Chemother. 2006 Jul;58(1):85-94
pubmed: 16698847
Int J Mol Sci. 2021 Aug 26;22(17):
pubmed: 34502130
AIMS Microbiol. 2019 Mar 11;5(1):77-86
pubmed: 31384704
Inflamm Bowel Dis. 2018 Nov 29;24(12):2579-2589
pubmed: 30053064
Domest Anim Endocrinol. 2016 Jul;56 Suppl:S66-83
pubmed: 27345325
Int J Mol Sci. 2018 May 09;19(5):
pubmed: 29747442
Appl Environ Microbiol. 2016 Nov 21;82(24):7185-7196
pubmed: 27736791
Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11151-6
pubmed: 23776216
Appl Environ Microbiol. 2021 Apr 27;87(10):
pubmed: 33674431
Toxins (Basel). 2020 Jun 12;12(6):
pubmed: 32545455
Environ Microbiol. 2022 Dec;24(12):5825-5839
pubmed: 36123315
Front Microbiol. 2020 Sep 08;11:575072
pubmed: 33013813
Microbiol Spectr. 2017 Jun;5(3):
pubmed: 28643627
Med Microbiol Immunol. 2020 Jun;209(3):277-299
pubmed: 31784893
ISME J. 2016 Jul;10(7):1656-68
pubmed: 26859770
Sci Rep. 2019 Nov 28;9(1):17851
pubmed: 31780796
mSystems. 2021 Jun 29;:e0058321
pubmed: 34184911
Genome Res. 2017 May;27(5):722-736
pubmed: 28298431
Microorganisms. 2020 Oct 31;8(11):
pubmed: 33142707
J Immunol. 2018 Oct 15;201(8):2492-2501
pubmed: 30171165
Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21
pubmed: 21062823
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
FEMS Microbiol Lett. 2016 Apr;363(7):
pubmed: 26936607
Pharmacology. 2020;105(1-2):102-108
pubmed: 31536982
Nat Rev Gastroenterol Hepatol. 2022 Apr;19(4):216
pubmed: 35140367
Syst Appl Microbiol. 2021 Nov;44(6):126273
pubmed: 34715437
J Clin Invest. 2008 Jan;118(1):229-38
pubmed: 18064305
Front Microbiol. 2022 Jun 17;13:886934
pubmed: 35783421
Nat Rev Microbiol. 2009 Jan;7(1):61-71
pubmed: 19029955
J Microbiol Biotechnol. 2021 Jul 28;31(7):949-955
pubmed: 34024895
NPJ Biofilms Microbiomes. 2022 Oct 31;8(1):88
pubmed: 36316342
Appl Microbiol Biotechnol. 2022 Mar;106(5-6):1957-1965
pubmed: 35235007
Trends Microbiol. 2018 Apr;26(4):339-350
pubmed: 29089173
Appl Environ Microbiol. 2020 Nov 10;86(23):
pubmed: 32948523
Food Funct. 2019 Mar 20;10(3):1595-1608
pubmed: 30806428
PeerJ. 2019 Mar 4;7:e6554
pubmed: 30863681
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Biochem Biophys Res Commun. 2019 Oct 15;518(2):294-298
pubmed: 31420164
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802
pubmed: 35073327
Life Sci. 2022 Jan 15;289:120243
pubmed: 34922941
Genome Biol. 2022 Mar 7;23(1):74
pubmed: 35255937
Nucleic Acids Res. 2002 Apr 1;30(7):1575-84
pubmed: 11917018
Bioinformatics. 2012 Jan 1;28(1):125-6
pubmed: 22039206
Nature. 2011 May 12;473(7346):174-80
pubmed: 21508958
Curr Res Microb Sci. 2021 Feb 26;2:100024
pubmed: 34841315
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Nutrients. 2019 Sep 21;11(10):
pubmed: 31546671
Appl Microbiol Biotechnol. 2019 Feb;103(3):1299-1310
pubmed: 30564851
Bioeng Bugs. 2012 Mar-Apr;3(2):73-9
pubmed: 22095053
Cell Chem Biol. 2017 Apr 20;24(4):515-524.e5
pubmed: 28392148
Front Genet. 2015 Mar 19;6:81
pubmed: 25852737
Appl Environ Microbiol. 2021 Mar 11;87(7):
pubmed: 33483308
BioData Min. 2015 Jan 08;8(1):1
pubmed: 25621011
Microb Ecol. 2018 Jan;75(1):228-238
pubmed: 28721502
Microorganisms. 2020 May 13;8(5):
pubmed: 32413974
Comput Struct Biotechnol J. 2021 Mar 09;19:1472-1487
pubmed: 33777340
Commun Biol. 2021 Jan 25;4(1):106
pubmed: 33495563
Microorganisms. 2020 Mar 02;8(3):
pubmed: 32131456
Appl Environ Microbiol. 2014 Jan;80(2):730-40
pubmed: 24242237
Food Funct. 2022 Oct 3;13(19):9947-9958
pubmed: 36056711
Front Immunol. 2019 Oct 01;10:2348
pubmed: 31632412
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93
pubmed: 26582926
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5
pubmed: 24270786