A Data-Driven Approach to Construct a Molecular Map of

Trypanosoma cruzi chagas disease drug target gene ontology pathways system biology vaccine targets

Journal

Vaccines
ISSN: 2076-393X
Titre abrégé: Vaccines (Basel)
Pays: Switzerland
ID NLM: 101629355

Informations de publication

Date de publication:
26 Jan 2023
Historique:
received: 06 09 2022
revised: 10 01 2023
accepted: 12 01 2023
entrez: 28 2 2023
pubmed: 1 3 2023
medline: 1 3 2023
Statut: epublish

Résumé

Chagas disease (CD) is endemic in large parts of Central and South America, as well as in Texas and the southern regions of the United States. Successful parasites, such as the causative agent of CD,

Identifiants

pubmed: 36851145
pii: vaccines11020267
doi: 10.3390/vaccines11020267
pmc: PMC9963959
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Robert J Kleberg Jr and Helen C Kleberg Foundation
ID : PO 7000001041
Organisme : Science and Engineering Research Board
ID : CVD/2020/000842
Organisme : Department of Biotechnology
ID : BT/PR17252.BID/7/708/2016

Références

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61
pubmed: 14681407
Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62
pubmed: 19843604
Antimicrob Agents Chemother. 2007 Apr;51(4):1359-64
pubmed: 17220408
BMC Bioinformatics. 2019 May 1;20(Suppl 7):198
pubmed: 31074386
PLoS Negl Trop Dis. 2021 Sep 3;15(9):e0009689
pubmed: 34478444
Front Chem. 2021 Jan 28;8:630888
pubmed: 33732684
Nat Immunol. 2011 Jul 10;12(8):786-95
pubmed: 21743478
Clin Infect Dis. 2010 Nov 15;51(10):e69-75
pubmed: 20932171
J Mol Graph Model. 2017 Oct;77:168-180
pubmed: 28865321
Bioinformatics. 2008 Jan 15;24(2):282-4
pubmed: 18006545
Curr Protoc Bioinformatics. 2016 Jun 20;54:5.6.1-5.6.37
pubmed: 27322406
Nature. 1998 Jun 4;393(6684):440-2
pubmed: 9623998
Bioinformatics. 2007 Nov 1;23(21):2947-8
pubmed: 17846036
Acta Trop. 2020 Jan;201:105218
pubmed: 31610148
PLoS One. 2012;7(3):e32833
pubmed: 22431985
Nucleic Acids Res. 2002 Jan 1;30(1):59-61
pubmed: 11752254
J Steroid Biochem Mol Biol. 1993 Dec;46(6):673-9
pubmed: 8274401
J Mol Biol. 1993 Dec 5;234(3):779-815
pubmed: 8254673
Mol Biochem Parasitol. 1999 Jan 5;98(1):105-16
pubmed: 10029313
BMC Bioinformatics. 2012;13 Suppl 17:S6
pubmed: 23282219
Biomed Res Int. 2015;2015:239654
pubmed: 26060814
N Engl J Med. 2005 Nov 3;353(18):1926-33
pubmed: 16267323
Science. 2005 Jul 15;309(5733):409-15
pubmed: 16020725
PLoS One. 2015 Jun 15;10(6):e0128707
pubmed: 26076455
Sci Rep. 2014 Apr 16;4:4703
pubmed: 24736467
Mol Biochem Parasitol. 2006 Apr;146(2):151-62
pubmed: 16442642
Sci Rep. 2016 May 27;6:26937
pubmed: 27230471
PLoS One. 2016 Feb 17;11(2):e0146759
pubmed: 26886906
J Proteome Res. 2008 Jun;7(6):2357-67
pubmed: 18435557
Nat Chem Biol. 2008 Nov;4(11):682-90
pubmed: 18936753
Protein Sci. 2012 Dec;21(12):1942-7
pubmed: 23011904
Nat Immunol. 2009 Jan;10(1):116-125
pubmed: 19029902
Rev Soc Bras Med Trop. 2012 Jun;45(3):286-96
pubmed: 22760123
J Mol Graph Model. 2010 Nov;29(3):326-30
pubmed: 20965756
PLoS Negl Trop Dis. 2020 Oct 6;14(10):e0008728
pubmed: 33021977
Sci Rep. 2021 Sep 2;11(1):17626
pubmed: 34475453
J Antimicrob Chemother. 2013 Sep;68(9):2164-9
pubmed: 23645584
Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3747-52
pubmed: 15007165
Antimicrob Agents Chemother. 2010 Nov;54(11):4896-9
pubmed: 20823286
PLoS Negl Trop Dis. 2015 Jan 08;9(1):e3430
pubmed: 25568941
Semin Oncol. 1991 Feb;18(1 Suppl 3):49-55
pubmed: 1848372
Infect Immun. 2012 Jul;80(7):2258-64
pubmed: 22431647
Chem Biodivers. 2010 May;7(5):1051-64
pubmed: 20491065
Am J Trop Med Hyg. 2007 Jan;76(1):58-61
pubmed: 17255230
Arch Biochem Biophys. 2008 Nov 15;479(2):163-9
pubmed: 18809372
Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444
pubmed: 34791371
J Theor Biol. 2014 Dec 7;362:9-16
pubmed: 24931674
Acta Trop. 2015 May;145:79-87
pubmed: 25733492
Nat Cell Biol. 2009 May;11(5):521-6
pubmed: 19404331
Comput Biol Med. 2022 Jun;145:105401
pubmed: 35381451
PLoS One. 2011;6(7):e21800
pubmed: 21789182
Science. 2002 Aug 30;297(5586):1551-5
pubmed: 12202830
N Engl J Med. 2014 May 15;370(20):1899-908
pubmed: 24827034
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Immunol Rev. 2011 Jan;239(1):237-70
pubmed: 21198676
J Chem Inf Model. 2005 Jan-Feb;45(1):177-82
pubmed: 15667143
Front Psychiatry. 2020 Jul 15;11:667
pubmed: 32760300
J Comput Chem. 2010 Jan 30;31(2):455-61
pubmed: 19499576
Curr Protoc Bioinformatics. 2013 Jun;Chapter 3:3.1.1-3.1.8
pubmed: 23749753
PeerJ. 2022 May 19;10:e13380
pubmed: 35611169
J Am Soc Nephrol. 2006 Jul;17(7):1807-19
pubmed: 16738015
J R Soc Interface. 2005 Dec 22;2(5):419-30
pubmed: 16849202
J Exp Med. 2002 Nov 4;196(9):1241-51
pubmed: 12417633
Evol Appl. 2020 Sep 10;13(10):2663-2672
pubmed: 33294015
Nat Immunol. 2014 Feb;15(2):195-204
pubmed: 24336226
J Clin Endocrinol Metab. 2011 Jan;96(1):210-9
pubmed: 20943776
Acta Trop. 2017 Oct;174:149-152
pubmed: 28720492
Mol Biosyst. 2012 Oct;8(10):2614-25
pubmed: 22820726
Expert Rev Anti Infect Ther. 2009 Mar;7(2):157-63
pubmed: 19254164
BMC Syst Biol. 2009 May 16;3:52
pubmed: 19445715
J Cheminform. 2011 Oct 07;3:33
pubmed: 21982300
Molecules. 2009 Nov 10;14(11):4570-90
pubmed: 19924086
Int J Mol Sci. 2018 Aug 20;19(8):
pubmed: 30127309
Acta Trop. 2012 Apr;122(1):108-12
pubmed: 22212465
Cells. 2021 Nov 09;10(11):
pubmed: 34831321
Mediators Inflamm. 2012;2012:478601
pubmed: 22619483
J Inherit Metab Dis. 2019 Jul;42(4):647-654
pubmed: 30746739
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Nucleic Acids Res. 2011 Jan;39(Database issue):D1035-41
pubmed: 21059682
Curr Top Med Chem. 2021;21(21):1900-1921
pubmed: 33655860
Biochemistry. 2001 Jan 30;40(4):1053-62
pubmed: 11170428
Antimicrob Agents Chemother. 2012 Sep;56(9):4914-21
pubmed: 22777048
Circulation. 2010 Jan 5;121(1):157-70
pubmed: 20048233
Front Immunol. 2018 Mar 07;9:456
pubmed: 29563916
Biochemistry. 2004 Mar 2;43(8):2188-98
pubmed: 14979715
BMC Bioinformatics. 2008 Feb 19;9:104
pubmed: 18282303
Proc Natl Acad Sci U S A. 2007 May 22;104(21):8685-90
pubmed: 17502601
Nutr Clin Pract. 2017 Apr;32(1_suppl):30S-47S
pubmed: 28388380
J Cheminform. 2018 Aug 14;10(1):39
pubmed: 30109435
Sci Rep. 2018 May 30;8(1):8399
pubmed: 29849031

Auteurs

Swarsat Kaushik Nath (SK)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Preeti Pankajakshan (P)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Trapti Sharma (T)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Priya Kumari (P)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Sweety Shinde (S)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Nikita Garg (N)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Kartavya Mathur (K)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Nevidita Arambam (N)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Divyank Harjani (D)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Manpriya Raj (M)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Garwit Kwatra (G)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Sayantan Venkatesh (S)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Alakto Choudhoury (A)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Saima Bano (S)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Prashansa Tayal (P)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Mahek Sharan (M)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Ruchika Arora (R)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Ulrich Strych (U)

Texas Children's Hospital Center for Vaccine Development, Departments of Pediatrics and Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA.
National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030, USA.

Peter J Hotez (PJ)

Texas Children's Hospital Center for Vaccine Development, Departments of Pediatrics and Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA.
National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030, USA.
Department of Biology, Baylor University, Waco, TX 76798, USA.

Maria Elena Bottazzi (ME)

Texas Children's Hospital Center for Vaccine Development, Departments of Pediatrics and Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA.
National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030, USA.
Department of Biology, Baylor University, Waco, TX 76798, USA.

Kamal Rawal (K)

Centre for Computational Biology and Bioinformatics, Amity Institute of Biotechnology, Amity University, Noida 201303, Uttar Pradesh, India.

Classifications MeSH