β-Sitosterol, a phytocompound from

Parthenium hysterophorus anti-diabetic enzyme inhibition molecular docking molecular dynamic simulation α-Amylase β-Sitosterol

Journal

Journal of biomolecular structure & dynamics
ISSN: 1538-0254
Titre abrégé: J Biomol Struct Dyn
Pays: England
ID NLM: 8404176

Informations de publication

Date de publication:
07 Mar 2023
Historique:
entrez: 7 3 2023
pubmed: 8 3 2023
medline: 8 3 2023
Statut: aheadofprint

Résumé

The study aims to identify and validate a potential α-Amylase inhibitor from the leaf extract of the Parthenium hysterophorus. Molecular docking and dynamics analyses were performed to test the anti-diabetic efficacy of the compound by focusing on α-Amylase inhibition. The molecular docking study using AutoDock Vina (PyRx) and SeeSAR tools identified β-Sitosterol as an effective α-Amylase inhibitory compound. Among the analysed fifteen phytochemicals, β-Sitosterol demonstrated the most appreciable binding energy (-9.0 Kcal/mol) and is comparatively higher than the binding energy of the standard α-Amylase inhibitor, the Acarbose (-7.6 Kcal/mol). The significance of the interaction between β-Sitosterol and α-Amylase was further investigated using Molecular Dynamics Simulation (MDS) for 100 ns via GROMACS. The data reveals that the compound could exhibit the highest stability with α-Amylase regarding RMSD, RMSF, SASA and Potential Energy analysis. The key residue of α-Amylase (Asp -197) shows a significantly low fluctuation of 0.7 Å while interacting with β-Sitosterol. The data obtained from MDS results strongly suggested the potential inhibitory impact of β-Sitosterol on α-Amylase. In addition, the proposed phytochemical was purified from the leaf extracts of

Identifiants

pubmed: 36880668
doi: 10.1080/07391102.2023.2186703
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1-12

Auteurs

Lokesh Ravi (L)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Shabari Girish (S)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Sharun Roy D'Souza (SR)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Anirudh Sreenivas Bk (A)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Shree Kumari Gr (S)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Archana O (A)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Ajith Kumar K (A)

Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.

Reji Manjunathan (R)

Multi-Disciplinary Research Unit, Chengalpattu Government Medical College and Hospital, Chengalpattu, Tamil Nadu, India.

Classifications MeSH