Domain shuffling of a highly mutable ligand-binding fold drives adhesin generation across the bacterial kingdom.


Journal

Proteins
ISSN: 1097-0134
Titre abrégé: Proteins
Pays: United States
ID NLM: 8700181

Informations de publication

Date de publication:
08 2023
Historique:
revised: 27 02 2023
received: 11 11 2022
accepted: 28 02 2023
medline: 13 7 2023
pubmed: 14 3 2023
entrez: 13 3 2023
Statut: ppublish

Résumé

Bacterial fibrillar adhesins are specialized extracellular polypeptides that promote the attachment of bacteria to the surfaces of other cells or materials. Adhesin-mediated interactions are critical for the establishment and persistence of stable bacterial populations within diverse environmental niches and are important determinants of virulence. The fibronectin (Fn)-binding fibrillar adhesin CshA, and its paralogue CshB, play important roles in host colonization by the oral commensal and opportunistic pathogen Streptococcus gordonii. As paralogues are often catalysts for functional diversification, we have probed the early stages of structural and functional divergence in Csh proteins by determining the X-ray crystal structure of the CshB adhesive domain NR2 and characterizing its Fn-binding properties in vitro. Despite sharing a common fold, CshB_NR2 displays an ~1.7-fold reduction in Fn-binding affinity relative to CshA_NR2. This correlates with reduced electrostatic charge in the Fn-binding cleft. Complementary bioinformatic studies reveal that homologues of CshA/B_NR2 domains are widely distributed in both Gram-positive and Gram-negative bacteria, where they are found housed within functionally cryptic multi-domain polypeptides. Our findings are consistent with the classification of Csh adhesins and their relatives as members of the recently defined polymer adhesin domain (PAD) family of bacterial proteins.

Identifiants

pubmed: 36912614
doi: 10.1002/prot.26487
doi:

Substances chimiques

Anti-Bacterial Agents 0
Ligands 0
Membrane Proteins 0
Adhesins, Bacterial 0
Bacterial Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1007-1020

Subventions

Organisme : British Heart Foundation
ID : PG/17/10/32829
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M012107/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/T008741/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L01386X/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/T001968/1
Pays : United Kingdom

Informations de copyright

© 2023 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals LLC.

Références

Front Microbiol. 2011 May 30;2:93
pubmed: 21747801
Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):68-84
pubmed: 29533233
J Biol Chem. 2017 Feb 3;292(5):1538-1549
pubmed: 27920201
Mol Microbiol. 1992 Oct;6(20):2939-49
pubmed: 1479886
Infect Immun. 2018 Jun 21;86(7):
pubmed: 29685986
Nucleic Acids Res. 2019 Jul 2;47(W1):W636-W641
pubmed: 30976793
J Mol Biol. 2001 Jan 19;305(3):567-80
pubmed: 11152613
Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):
pubmed: 34074781
Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3
pubmed: 15299374
Curr Opin Struct Biol. 2000 Jun;10(3):355-8
pubmed: 10851188
Genome Biol. 2015 Apr 30;16:88
pubmed: 25924720
J Mol Biol. 2021 May 28;433(11):166704
pubmed: 33186584
Nucleic Acids Res. 2020 Jan 8;48(D1):D265-D268
pubmed: 31777944
Nat Rev Microbiol. 2004 Dec;2(12):933-45
pubmed: 15550939
J Gen Microbiol. 1963 Apr;31:125-33
pubmed: 13941150
J Mol Evol. 2006 Oct;63(4):513-25
pubmed: 17021929
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Nat Methods. 2022 Jun;19(6):679-682
pubmed: 35637307
BMC Genomics. 2021 Jul 18;22(1):550
pubmed: 34275445
J Appl Microbiol. 2015 Oct;119(4):1148-57
pubmed: 26176557
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2184-95
pubmed: 15572771
PLoS One. 2013 May 17;8(5):e63768
pubmed: 23691093
Cell Host Microbe. 2009 Jun 18;5(6):580-92
pubmed: 19527885
Mol Biol Evol. 1987 Jul;4(4):406-25
pubmed: 3447015
Protein Eng. 1999 Feb;12(2):85-94
pubmed: 10195279
Infect Immun. 1996 Oct;64(10):4204-10
pubmed: 8926089
Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360
pubmed: 30398656
Mol Microbiol. 2018 Aug;109(3):291-305
pubmed: 29723434
Nucleic Acids Res. 2002 Jan 1;30(1):281-3
pubmed: 11752315
Protein Sci. 2011 May;20(5):759-72
pubmed: 21404359
Nat Biotechnol. 2019 Apr;37(4):420-423
pubmed: 30778233
Mol Oral Microbiol. 2015 Oct;30(5):411-24
pubmed: 25965671
Trends Biochem Sci. 1995 Nov;20(11):478-80
pubmed: 8578593
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Mol Microbiol. 1994 Nov;14(4):743-54
pubmed: 7891560
Nucleic Acids Res. 2007;35(6):e45
pubmed: 17317681
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419
pubmed: 33125078
Cell Mol Life Sci. 2009 Feb;66(4):613-35
pubmed: 18953686
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
J Comput Chem. 2011 May;32(7):1488-91
pubmed: 21425296
BMC Evol Biol. 2005 Apr 14;5:28
pubmed: 15831095
Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5983-8
pubmed: 20231452
Front Microbiol. 2020 Nov 26;11:599899
pubmed: 33324381
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Proteins. 2023 Aug;91(8):1007-1020
pubmed: 36912614
J Chem Theory Comput. 2011 Feb 8;7(2):525-37
pubmed: 26596171
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W5-9
pubmed: 18440982
J Biol Chem. 2020 May 8;295(19):6689-6699
pubmed: 32229583
Clin Microbiol Rev. 1993 Apr;6(2):176-92
pubmed: 8472248
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147

Auteurs

Rob Barringer (R)

School of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.

Alice E Parnell (AE)

School of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
BrisSynBio Synthetic Biology Research Centre, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, BS8 1TQ, UK.

Aleix Lafita (A)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.

Vivian Monzon (V)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.

Catherine R Back (CR)

School of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
BrisSynBio Synthetic Biology Research Centre, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, BS8 1TQ, UK.

Mariusz Madej (M)

Department of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Krakow, Poland.

Jan Potempa (J)

Department of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Krakow, Poland.
Department of Oral Immunology and Infectious Diseases, University of Louisville School of Dentistry, Louisville, Kentucky, USA.

Angela H Nobbs (AH)

Bristol Dental School, University of Bristol, Lower Maudlin Street, Bristol, BS1 2LY, UK.

Steven G Burston (SG)

School of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.

Alex Bateman (A)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.

Paul R Race (PR)

School of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
BrisSynBio Synthetic Biology Research Centre, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, BS8 1TQ, UK.

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Classifications MeSH