The NLRomes of Zea mays NAM founder lines and Zea luxurians display presence-absence variation, integrated domain diversity, and mobility.
Zea luxurians
Zea mays
NLR
disease resistance
Journal
Molecular plant pathology
ISSN: 1364-3703
Titre abrégé: Mol Plant Pathol
Pays: England
ID NLM: 100954969
Informations de publication
Date de publication:
07 2023
07 2023
Historique:
revised:
09
02
2023
received:
31
05
2022
accepted:
14
02
2023
medline:
12
6
2023
pubmed:
18
3
2023
entrez:
17
3
2023
Statut:
ppublish
Résumé
Plant pathogens cause significant crop loss worldwide, and new resistance genes deployed to combat diseases can be overcome quickly. Understanding the existing resistance gene diversity within the germplasm of major crops, such as maize, is crucial for the development of new disease-resistant varieties. We analysed the nucleotide-binding leucine-rich repeat receptors (NLRs) of 26 recently sequenced diverse founder lines from the maize nested association mapping (NAM) population and compared them to the R gene complement present in a wild relative of maize, Zea luxurians. We found that NLRs in both species contain a large diversity of atypical integrated domains, including many domains that have not previously been found in the NLRs of other species. Additionally, the single Z. luxurians genome was found to have greater integrated atypical domain diversity than all 26 NAM founder lines combined, indicating that this species may represent a rich source of novel resistance genes. NLRs were also found to have very high sequence diversity and presence-absence variation among the NAM founder lines, with a large NLR cluster on Chr10 representing a diversity hotspot. Additionally, NLRs were shown to be mobile within maize genomes, with several putative interchromosomal translocations identified.
Identifiants
pubmed: 36929631
doi: 10.1111/mpp.13319
pmc: PMC10257044
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
742-757Informations de copyright
© 2023 Corteva Agriscience. Molecular Plant Pathology published by John Wiley & Sons Ltd on behalf of British Society for Plant Pathology.
Références
Plant J. 2021 Apr;106(2):526-535
pubmed: 33533097
Trends Plant Sci. 2019 Aug;24(8):688-699
pubmed: 31266697
Plant Biotechnol J. 2020 Apr;18(4):969-982
pubmed: 31553100
New Phytol. 2021 Jan;229(1):532-547
pubmed: 32810286
Cell Res. 2022 Oct;32(10):878-896
pubmed: 35821092
Proc Int Conf Intell Syst Mol Biol. 1995;3:114-20
pubmed: 7584426
Nat Methods. 2017 Apr;14(4):417-419
pubmed: 28263959
Nat Commun. 2021 Nov 5;12(1):6263
pubmed: 34741017
Cytogenet Genome Res. 2010 Jul;129(1-3):6-16
pubmed: 20551613
Plant J. 2022 Sep;111(5):1252-1266
pubmed: 35779281
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Trends Genet. 2004 Mar;20(3):116-22
pubmed: 15049302
Front Genet. 2021 May 24;12:694682
pubmed: 34108996
Mol Plant Pathol. 2023 Jul;24(7):758-767
pubmed: 36180934
Front Plant Sci. 2016 Jul 21;7:1065
pubmed: 27493652
Proc Natl Acad Sci U S A. 2021 Nov 2;118(44):
pubmed: 34702740
PLoS Biol. 2020 Sep 14;18(9):e3000783
pubmed: 32925907
Annu Rev Phytopathol. 2018 Aug 25;56:21-40
pubmed: 29768136
Front Plant Sci. 2018 Jun 28;9:886
pubmed: 30002665
Trends Immunol. 2014 Jul;35(7):345-51
pubmed: 24946686
Bioinformatics. 2014 Mar 1;30(5):734-6
pubmed: 24115168
Plant Physiol. 2016 Apr;170(4):2095-109
pubmed: 26839128
Science. 2021 Aug 6;373(6555):655-662
pubmed: 34353948
Plant Cell. 1998 Nov;10(11):1833-46
pubmed: 9811792
Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):8113-8118
pubmed: 28698366
Mol Genet Genomics. 2008 Aug;280(2):111-25
pubmed: 18553106
New Phytol. 2012 Jul;195(1):71-84
pubmed: 22530598
Front Immunol. 2013 Sep 25;4:297
pubmed: 24093022
Nature. 2020 Dec;588(7837):277-283
pubmed: 33239791
Cell Host Microbe. 2010 Apr 22;7(4):290-301
pubmed: 20413097
Theor Appl Genet. 2014 Feb;127(2):509-19
pubmed: 24346479
Front Plant Sci. 2019 Jan 30;10:26
pubmed: 30761170
New Phytol. 2018 Jul;219(1):17-24
pubmed: 29131341
New Phytol. 2016 Apr;210(2):618-26
pubmed: 26848538
Genome Biol. 2014;15(12):550
pubmed: 25516281
J Mol Biol. 2010 Feb 5;395(5):937-49
pubmed: 19962994
BMC Biol. 2016 Feb 19;14:8
pubmed: 26891798
Plant Cell. 2003 Apr;15(4):809-34
pubmed: 12671079
Proc Natl Acad Sci U S A. 2019 Jan 8;116(2):496-505
pubmed: 30584105
Annu Rev Phytopathol. 2018 Aug 25;56:243-267
pubmed: 29949721
Philos Trans R Soc Lond B Biol Sci. 2019 Mar 4;374(1767):20180322
pubmed: 30967029
Mol Plant. 2022 May 2;15(5):904-912
pubmed: 35032688
Nat Commun. 2016 Nov 16;7:13274
pubmed: 27848933
Breed Sci. 2013 Mar;63(1):116-24
pubmed: 23641188
Cell. 2019 Aug 22;178(5):1260-1272.e14
pubmed: 31442410
Mol Biol Evol. 1987 Jul;4(4):406-25
pubmed: 3447015
Plant Biotechnol J. 2020 Sep;18(9):1946-1954
pubmed: 32020732
Nat Commun. 2022 Jul 29;13(1):4392
pubmed: 35906218
Cell Host Microbe. 2008 Jul 17;4(1):17-27
pubmed: 18621007
Genome Res. 1998 Nov;8(11):1113-30
pubmed: 9847076
Genome Biol. 2021 May 31;22(1):166
pubmed: 34059118
Plant Cell. 2021 May 31;33(4):998-1015
pubmed: 33561286
Plant Cell. 2017 Apr;29(4):618-637
pubmed: 28302675
Plant Physiol. 2012 Apr;158(4):1819-32
pubmed: 22331412
Nature. 2020 Dec;588(7837):284-289
pubmed: 33239781
Science. 2013 Aug 16;341(6147):783-786
pubmed: 23811222
Front Plant Sci. 2014 Nov 25;5:606
pubmed: 25506347
Plant Biotechnol J. 2020 Jun;18(6):1376-1383
pubmed: 31742855
J Biol Chem. 2016 Mar 4;291(10):5199-205
pubmed: 26742849
Genetics. 2008 Jan;178(1):539-51
pubmed: 18202393
Front Plant Sci. 2013 May 16;4:139
pubmed: 23720666
Genome Biol. 2013 Jun 12;14(6):R58
pubmed: 23758725
Nat Genet. 2018 Feb;50(2):285-296
pubmed: 29358651
Plant Cell. 2008 Aug;20(8):2009-17
pubmed: 18723576
Plant Genome. 2021 Mar;14(1):e20060
pubmed: 33179454
Nat Commun. 2021 Nov 25;12(1):6915
pubmed: 34824299
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
Nature. 2006 Nov 16;444(7117):323-9
pubmed: 17108957
Plant J. 2013 Nov;76(3):530-44
pubmed: 23937694
Cell. 2020 Jul 9;182(1):162-176.e13
pubmed: 32553274
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6080-4
pubmed: 11983901
Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5643-5652
pubmed: 30842282
Plant Physiol. 2019 Apr;179(4):1227-1235
pubmed: 30530739
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Plant Cell. 1999 Jul;11(7):1365-76
pubmed: 10402435
Int J Mol Sci. 2018 Jun 04;19(6):
pubmed: 29867062
Genetics. 1999 Dec;153(4):1929-48
pubmed: 10581297
Plant Physiol. 2020 Jun;183(2):468-482
pubmed: 32184345
Nat Commun. 2016 Nov 11;7:13390
pubmed: 27834372
Mol Plant Pathol. 2023 Jul;24(7):742-757
pubmed: 36929631