Improved Field-Based Soybean Seed Counting and Localization with Feature Level Considered.


Journal

Plant phenomics (Washington, D.C.)
ISSN: 2643-6515
Titre abrégé: Plant Phenomics
Pays: United States
ID NLM: 101769942

Informations de publication

Date de publication:
2023
Historique:
received: 22 09 2022
accepted: 01 02 2023
entrez: 20 3 2023
pubmed: 21 3 2023
medline: 21 3 2023
Statut: ppublish

Résumé

Developing automated soybean seed counting tools will help automate yield prediction before harvesting and improving selection efficiency in breeding programs. An integrated approach for counting and localization is ideal for subsequent analysis. The traditional method of object counting is labor-intensive and error-prone and has low localization accuracy. To quantify soybean seed directly rather than sequentially, we propose a P2PNet-Soy method. Several strategies were considered to adjust the architecture and subsequent postprocessing to maximize model performance in seed counting and localization. First, unsupervised clustering was applied to merge closely located overcounts. Second, low-level features were included with high-level features to provide more information. Third, atrous convolution with different kernel sizes was applied to low- and high-level features to extract scale-invariant features to factor in soybean size variation. Fourth, channel and spatial attention effectively separated the foreground and background for easier soybean seed counting and localization. At last, the input image was added to these extracted features to improve model performance. Using 24 soybean accessions as experimental materials, we trained the model on field images of individual soybean plants obtained from one side and tested them on images obtained from the opposite side, with all the above strategies. The superiority of the proposed P2PNet-Soy in soybean seed counting and localization over the original P2PNet was confirmed by a reduction in the value of the mean absolute error, from 105.55 to 12.94. Furthermore, the trained model worked effectively on images obtained directly from the field without background interference.

Identifiants

pubmed: 36939414
doi: 10.34133/plantphenomics.0026
pii: 0026
pmc: PMC10019992
doi:

Types de publication

Journal Article

Langues

eng

Pagination

0026

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Auteurs

Jiangsan Zhao (J)

Graduate School of Agriculture and Life Sciences, The University of Tokyo, Tokyo, Japan.

Akito Kaga (A)

Institute of Crop Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.

Tetsuya Yamada (T)

Institute of Crop Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.

Kunihiko Komatsu (K)

Western Region Agricultural Research Center, National Agriculture and Food Research Organization, Fukuyama, Hiroshima, Japan.

Kaori Hirata (K)

Tohoku Agricultural Research Center, National Agriculture and Food Research Organization, Morioka, Iwate, Japan.

Akio Kikuchi (A)

Tohoku Agricultural Research Center, National Agriculture and Food Research Organization, Morioka, Iwate, Japan.

Masayuki Hirafuji (M)

Graduate School of Agriculture and Life Sciences, The University of Tokyo, Tokyo, Japan.

Seishi Ninomiya (S)

Graduate School of Agriculture and Life Sciences, The University of Tokyo, Tokyo, Japan.

Wei Guo (W)

Graduate School of Agriculture and Life Sciences, The University of Tokyo, Tokyo, Japan.

Classifications MeSH