Discovering interpretable medical process models: A case study in trauma resuscitation.

Consensus sequence Knowledge discovery Process mining Resuscitation

Journal

Journal of biomedical informatics
ISSN: 1532-0480
Titre abrégé: J Biomed Inform
Pays: United States
ID NLM: 100970413

Informations de publication

Date de publication:
04 2023
Historique:
received: 30 06 2022
revised: 20 01 2023
accepted: 13 03 2023
pmc-release: 01 04 2024
medline: 4 4 2023
pubmed: 21 3 2023
entrez: 20 3 2023
Statut: ppublish

Résumé

Understanding the actual work (i.e., "work-as-done") rather than theorized work (i.e., "work-as-imagined") during complex medical processes is critical for developing approaches that improve patient outcomes. Although process mining has been used to discover process models from medical activity logs, it often omits critical steps or produces cluttered and unreadable models. In this paper, we introduce a TraceAlignment-based ProcessDiscovery method called TAD Miner to build interpretable process models for complex medical processes. TAD Miner creates simple linear process models using a threshold metric that optimizes the consensus sequence to represent the backbone process, and then identifies both concurrent activities and uncommon-but-critical activities to represent the side branches. TAD Miner also identifies the locations of repeated activities, an essential feature for representing medical treatment steps. We conducted a study using activity logs of 308 pediatric trauma resuscitations to develop and evaluate TAD Miner. TAD Miner was used to discover process models for five resuscitation goals, including establishing intravenous (IV) access, administering non-invasive oxygenation, performing back assessment, administering blood transfusion, and performing intubation. We quantitively evaluated the process models with several complexity and accuracy metrics, and performed qualitative evaluation with four medical experts to assess the accuracy and interpretability of the discovered models. Through these evaluations, we compared the performance of our method to that of two state-of-the-art process discovery algorithms: Inductive Miner and Split Miner. The process models discovered by TAD Miner had lower complexity and better interpretability than the state-of-the-art methods, and the fitness and precision of the models were comparable. We used the TAD process models to identify (1) the errors and (2)the best locations for the tentative steps in knowledge-driven expert models. The knowledge-driven models were revised based on the modifications suggested by the discovered models. The improved modeling using TAD Miner may enhance understanding of complex medical processes.

Identifiants

pubmed: 36940896
pii: S1532-0464(23)00065-5
doi: 10.1016/j.jbi.2023.104344
pmc: PMC10111432
mid: NIHMS1886015
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

104344

Subventions

Organisme : NLM NIH HHS
ID : R01 LM011834
Pays : United States

Informations de copyright

Copyright © 2023 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Références

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pubmed: 27109932
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pubmed: 31320332
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pubmed: 22925724
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pubmed: 22781213
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pubmed: 28057564

Auteurs

Keyi Li (K)

Electrical and Computer Engineering Department, Rutgers University, 94 Brett Road, Piscataway, NJ 08854, USA. Electronic address: kl734@rutgers.edu.

Ivan Marsic (I)

Electrical and Computer Engineering Department, Rutgers University, 94 Brett Road, Piscataway, NJ 08854, USA. Electronic address: marsic@rutgers.edu.

Aleksandra Sarcevic (A)

College of Computing and Informatics, Drexel University 3675 Market Street, Philadelphia, PA 19104, USA. Electronic address: aleksarc@drexel.edu.

Sen Yang (S)

Linkedin, 1000 W Maude Ave, Sunnyvale, CA 94085, USA. Electronic address: sy358@rutgers.edu.

Travis M Sullivan (TM)

Division of Trauma and Burn Surgery, Children's National Hospital, 111 Michigan Ave NW, Washington, DC 20010, USA. Electronic address: tsullivan@childrensnational.org.

Peyton E Tempel (PE)

Division of Trauma and Burn Surgery, Children's National Hospital, 111 Michigan Ave NW, Washington, DC 20010, USA. Electronic address: ptempel@childrensnational.org.

Zachary P Milestone (ZP)

Division of Trauma and Burn Surgery, Children's National Hospital, 111 Michigan Ave NW, Washington, DC 20010, USA. Electronic address: zmilestone@childrensnational.org.

Karen J O'Connell (KJ)

Division of Trauma and Burn Surgery, Children's National Hospital, 111 Michigan Ave NW, Washington, DC 20010, USA. Electronic address: koconnel@childrensnational.org.

Randall S Burd (RS)

Division of Trauma and Burn Surgery, Children's National Hospital, 111 Michigan Ave NW, Washington, DC 20010, USA. Electronic address: rburd@childrensnational.org.

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