Aberrant phase separation is a common killing strategy of positively charged peptides in biology and human disease.

LL-37 Phase separation RAN translation amyotrophic lateral sclerosis antimicrobial peptide cathelicidin crotamine frontotemporal dementia membraneless organelles protein aggregation

Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
09 Mar 2023
Historique:
pubmed: 23 3 2023
medline: 23 3 2023
entrez: 22 3 2023
Statut: epublish

Résumé

Positively charged repeat peptides are emerging as key players in neurodegenerative diseases. These peptides can perturb diverse cellular pathways but a unifying framework for how such promiscuous toxicity arises has remained elusive. We used mass-spectrometry-based proteomics to define the protein targets of these neurotoxic peptides and found that they all share similar sequence features that drive their aberrant condensation with these positively charged peptides. We trained a machine learning algorithm to detect such sequence features and unexpectedly discovered that this mode of toxicity is not limited to human repeat expansion disorders but has evolved countless times across the tree of life in the form of cationic antimicrobial and venom peptides. We demonstrate that an excess in positive charge is necessary and sufficient for this killer activity, which we name 'polycation poisoning'. These findings reveal an ancient and conserved mechanism and inform ways to leverage its design rules for new generations of bioactive peptides.

Identifiants

pubmed: 36945394
doi: 10.1101/2023.03.09.531820
pmc: PMC10028949
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIGMS NIH HHS
ID : P30 GM138441
Pays : United States
Organisme : NINDS NIH HHS
ID : P30 NS069375
Pays : United States
Organisme : NIGMS NIH HHS
ID : P41 GM103445
Pays : United States
Organisme : NINDS NIH HHS
ID : R35 NS097263
Pays : United States

Déclaration de conflit d'intérêts

DECLARATION OF INTERESTS: A.D.G has served as a consultant for Aquinnah Pharmaceuticals, Prevail Therapeutics, and Third Rock Ventures and is a scientific founder of Maze Therapeutics. A.C.O. is a co-founder of Werewool. All other authors declare no competing interests. A.S.H. is a scientific consultant for Dewpoint Therapeutics and on the Scientific Advisory Board for Prose Foods.

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Auteurs

Steven Boeynaems (S)

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.
Therapeutic Innovation Center (THINC), Baylor College of Medicine, Houston, TX 77030, USA.
Center for Alzheimer's and Neurodegenerative Diseases (CAND), Texas Children's Hospital, Houston, TX 77030, USA.
Dan L Duncan Comprehensive Cancer Center (DLDCCC), Baylor College of Medicine, Houston, TX 77030, USA.
Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

X Rosa Ma (XR)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Vivian Yeong (V)

Department of Chemical Engineering, Columbia University, New York, NY, 10027, USA.

Garrett M Ginell (GM)

Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Center for Biomolecular Condensates, Washington University in St Louis, St. Louis, MO 63130, USA.

Jian-Hua Chen (JH)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Department of Anatomy, University of California, San Francisco, CA 94143, USA.

Jacob A Blum (JA)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Lisa Nakayama (L)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Anushka Sanyal (A)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Adam Briner (A)

Clem Jones Centre for Ageing Dementia Research (CJCADR), Queensland Brain Institute (QBI), The University of Queensland, Brisbane, QLD 4072, Australia.

Delphi Van Haver (DV)

VIB-UGent Center for Medical Biotechnology, 9000 Gent, Belgium.
VIB Proteomics Core, 9000 Gent, Belgium.
Department of Biochemistry, Ghent University, 9000 Gent, Belgium.

Jarne Pauwels (J)

VIB-UGent Center for Medical Biotechnology, 9000 Gent, Belgium.
VIB Proteomics Core, 9000 Gent, Belgium.
Department of Biochemistry, Ghent University, 9000 Gent, Belgium.

Axel Ekman (A)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Department of Anatomy, University of California, San Francisco, CA 94143, USA.

H Broder Schmidt (HB)

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.

Kousik Sundararajan (K)

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.

Lucas Porta (L)

Department of Pharmacology, Escola Paulista de Medicina (EPM), Universidade Federal de São Paulo (UNIFESP), Sao Paulo, Brazil.

Keren Lasker (K)

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

Carolyn Larabell (C)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Department of Anatomy, University of California, San Francisco, CA 94143, USA.

Mirian A F Hayashi (MAF)

Department of Pharmacology, Escola Paulista de Medicina (EPM), Universidade Federal de São Paulo (UNIFESP), Sao Paulo, Brazil.

Anshul Kundaje (A)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Department of Computer Science, Stanford University, Stanford, CA 94305, USA.

Francis Impens (F)

VIB-UGent Center for Medical Biotechnology, 9000 Gent, Belgium.
VIB Proteomics Core, 9000 Gent, Belgium.
Department of Biochemistry, Ghent University, 9000 Gent, Belgium.

Allie Obermeyer (A)

Department of Chemical Engineering, Columbia University, New York, NY, 10027, USA.

Alex S Holehouse (AS)

Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Center for Biomolecular Condensates, Washington University in St Louis, St. Louis, MO 63130, USA.

Aaron D Gitler (AD)

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Chan Zuckerberg Biohub, San Francisco, CA 94158, USA.

Classifications MeSH