Machine learning classification of placental villous infarction, perivillous fibrin deposition, and intervillous thrombus.

Artificial intelligence Infarction Intervillous thrombus Machine learning Perivillous fibrin Placenta pathology

Journal

Placenta
ISSN: 1532-3102
Titre abrégé: Placenta
Pays: Netherlands
ID NLM: 8006349

Informations de publication

Date de publication:
04 2023
Historique:
received: 02 12 2022
revised: 09 03 2023
accepted: 11 03 2023
pmc-release: 01 04 2024
medline: 4 4 2023
pubmed: 24 3 2023
entrez: 23 3 2023
Statut: ppublish

Résumé

Placental parenchymal lesions are commonly encountered and carry significant clinical associations. However, they are frequently missed or misclassified by general practice pathologists. Interpretation of pathology slides has emerged as one of the most successful applications of machine learning (ML) in medicine with applications ranging from cancer detection and prognostication to transplant medicine. The goal of this study was to use a whole-slide learning model to identify and classify placental parenchymal lesions including villous infarctions, intervillous thrombi (IVT), and perivillous fibrin deposition (PVFD). We generated whole slide images from placental discs examined at our institution with infarct, IVT, PVFD, or no macroscopic lesion. Slides were analyzed as a set of overlapping patches. We extracted feature vectors from each patch using a pretrained convolutional neural network (EfficientNetV2L). We trained a model to assign attention to each vector and used the attentions as weights to produce a pooled feature vector. The pooled vector was classified as normal or 1 of 3 lesions using a fully connected network. Patch attention was plotted to highlight informative areas of the slide. Overall balanced accuracy in a test set of held-out slides was 0.86 with receiver-operator characteristic areas under the curve of 0.917-0.993. Cases of PVFD were frequently miscalled as normal or infarcts, the latter possibly due to the perivillous fibrin found at the periphery of infarctions. We used attention maps to further understand some errors, including one most likely due to poor tissue fixation and processing. We used a whole-slide learning paradigm to train models to recognize three of the most common placental parenchymal lesions. We used attention maps to gain insight into model function, which differed from intuitive explanations.

Identifiants

pubmed: 36958179
pii: S0143-4004(23)00056-5
doi: 10.1016/j.placenta.2023.03.003
pmc: PMC10156426
mid: NIHMS1886019
pii:
doi:

Substances chimiques

Fibrin 9001-31-4

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

43-50

Subventions

Organisme : NIBIB NIH HHS
ID : K08 EB030120
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001422
Pays : United States
Organisme : NLM NIH HHS
ID : R01 LM013523
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA220401
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001422
Pays : United States

Informations de copyright

Copyright © 2023 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors have no relevant disclosures.

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Auteurs

Jeffery A Goldstein (JA)

Northwestern University, Department of Pathology, Chicago, IL, USA. Electronic address: ja.goldstein@northwestern.edu.

Ramin Nateghi (R)

Northwestern University, Department of Pathology, Chicago, IL, USA.

Ismail Irmakci (I)

Northwestern University, Department of Pathology, Chicago, IL, USA.

Lee A D Cooper (LAD)

Northwestern University, Department of Pathology, Chicago, IL, USA; Northwestern University, McCormick School of Engineering, Evanston, IL, USA.

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