PDAtt-Unet: Pyramid Dual-Decoder Attention Unet for Covid-19 infection segmentation from CT-scans.

Convolutional neural network Covid-19 Deep learning Segmentation Unet

Journal

Medical image analysis
ISSN: 1361-8423
Titre abrégé: Med Image Anal
Pays: Netherlands
ID NLM: 9713490

Informations de publication

Date de publication:
05 2023
Historique:
received: 16 05 2022
revised: 10 01 2023
accepted: 08 03 2023
medline: 21 4 2023
pubmed: 27 3 2023
entrez: 26 3 2023
Statut: ppublish

Résumé

Since the emergence of the Covid-19 pandemic in late 2019, medical imaging has been widely used to analyze this disease. Indeed, CT-scans of the lungs can help diagnose, detect, and quantify Covid-19 infection. In this paper, we address the segmentation of Covid-19 infection from CT-scans. To improve the performance of the Att-Unet architecture and maximize the use of the Attention Gate, we propose the PAtt-Unet and DAtt-Unet architectures. PAtt-Unet aims to exploit the input pyramids to preserve the spatial awareness in all of the encoder layers. On the other hand, DAtt-Unet is designed to guide the segmentation of Covid-19 infection inside the lung lobes. We also propose to combine these two architectures into a single one, which we refer to as PDAtt-Unet. To overcome the blurry boundary pixels segmentation of Covid-19 infection, we propose a hybrid loss function. The proposed architectures were tested on four datasets with two evaluation scenarios (intra and cross datasets). Experimental results showed that both PAtt-Unet and DAtt-Unet improve the performance of Att-Unet in segmenting Covid-19 infections. Moreover, the combination architecture PDAtt-Unet led to further improvement. To Compare with other methods, three baseline segmentation architectures (Unet, Unet++, and Att-Unet) and three state-of-the-art architectures (InfNet, SCOATNet, and nCoVSegNet) were tested. The comparison showed the superiority of the proposed PDAtt-Unet trained with the proposed hybrid loss (PDEAtt-Unet) over all other methods. Moreover, PDEAtt-Unet is able to overcome various challenges in segmenting Covid-19 infections in four datasets and two evaluation scenarios.

Identifiants

pubmed: 36966605
pii: S1361-8415(23)00058-0
doi: 10.1016/j.media.2023.102797
pmc: PMC10027962
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

102797

Informations de copyright

Copyright © 2023 The Author(s). Published by Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Fares Bougourzi (F)

Institute of Applied Sciences and Intelligent Systems, National Research Council of Italy, 73100 Lecce, Italy; University Paris-Est Cretéil, Laboratoire LISSI, 94400, Vitry sur Seine, Paris, France. Electronic address: fares.bougourzi@isasi.cnr.it.

Cosimo Distante (C)

Institute of Applied Sciences and Intelligent Systems, National Research Council of Italy, 73100 Lecce, Italy. Electronic address: cosimo.distante@cnr.it.

Fadi Dornaika (F)

University of the Basque Country UPV/EHU, San Sebastian, Spain; Ho Chi Minh City Open University, 97 Vo Van Tan, Ward Vo Thi Sau, District 3, Ho Chi Minh City, 70000, Viet Nam. Electronic address: fadi.dornaika@ehu.eus.

Abdelmalik Taleb-Ahmed (A)

Université Polytechnique Hauts-de-France, Université de Lille, CNRS, Valenciennes, 59313, Hauts-de-France, France. Electronic address: Abdelmalik.Taleb-Ahmed@uphf.fr.

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