A novel CCDC91 isoform associated with ossification of the posterior longitudinal ligament of the spine works as a non-coding RNA to regulate osteogenic genes.
CCDC91
MIR890
OPLL
RUNX2
functional variant
non-coding RNA
osteogenesis
Journal
American journal of human genetics
ISSN: 1537-6605
Titre abrégé: Am J Hum Genet
Pays: United States
ID NLM: 0370475
Informations de publication
Date de publication:
06 04 2023
06 04 2023
Historique:
received:
18
01
2023
accepted:
07
03
2023
medline:
11
4
2023
pubmed:
30
3
2023
entrez:
29
3
2023
Statut:
ppublish
Résumé
Ossification of the posterior longitudinal ligament of the spine (OPLL) is a common intractable disease that causes spinal stenosis and myelopathy. We have previously conducted genome-wide association studies for OPLL and identified 14 significant loci, but their biological implications remain mostly unclear. Here, we examined the 12p11.22 locus and identified a variant in the 5' UTR of a novel isoform of CCDC91 that was associated with OPLL. Using machine learning prediction models, we determined that higher expression of the novel CCDC91 isoform was associated with the G allele of rs35098487. The risk allele of rs35098487 showed higher affinity in the binding of nuclear proteins and transcription activity. Knockdown and overexpression of the CCDC91 isoform in mesenchymal stem cells and MG-63 cells showed paralleled expression of osteogenic genes, including RUNX2, the master transcription factor of osteogenic differentiation. The CCDC91 isoform directly interacted with MIR890, which bound to RUNX2 and decreased RUNX2 expression. Our findings suggest that the CCDC91 isoform acts as a competitive endogenous RNA by sponging MIR890 to increase RUNX2 expression.
Identifiants
pubmed: 36990086
pii: S0002-9297(23)00088-5
doi: 10.1016/j.ajhg.2023.03.004
pmc: PMC10119134
pii:
doi:
Substances chimiques
Core Binding Factor Alpha 1 Subunit
0
RNA, Untranslated
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
638-647Informations de copyright
Copyright © 2023 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of interests The authors declare no competing interests.
Références
Nature. 2014 Mar 27;507(7493):462-70
pubmed: 24670764
DNA Cell Biol. 2006 Jul;25(7):418-28
pubmed: 16848684
Eur Cell Mater. 2012 Jul 09;24:1-17
pubmed: 22777949
J Biol Chem. 2021 Aug;297(2):100994
pubmed: 34298017
Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7
pubmed: 19474294
Sci Data. 2017 Aug 29;4:170112
pubmed: 28850106
J Biol Chem. 2009 Apr 17;284(16):10343-52
pubmed: 19204001
Mol Biol Cell. 2007 Sep;18(9):3486-501
pubmed: 17596511
J Bone Joint Surg Am. 2005 Mar;87(3):610-5
pubmed: 15741630
Mol Cell Biol. 1995 Apr;15(4):1858-69
pubmed: 7891679
Front Genet. 2020 May 13;11:424
pubmed: 32477401
Science. 2002 Mar 22;295(5563):2262-4
pubmed: 11910110
Nature. 2014 Mar 27;507(7493):455-461
pubmed: 24670763
J Surg Res. 2012 Mar;173(1):99-104
pubmed: 21035140
RNA Biol. 2018;15(8):1025-1031
pubmed: 30146915
Nat Genet. 2014 Sep;46(9):1012-6
pubmed: 25064007
Biochem J. 2003 Jan 1;369(Pt 1):163-71
pubmed: 12350225
Stem Cell Res Ther. 2019 Feb 22;10(1):65
pubmed: 30795815
Nat Genet. 2006 Aug;38(8):921-5
pubmed: 16845397
Eur Cell Mater. 2014 Oct 23;28:269-86
pubmed: 25340806
Science. 2020 Sep 11;369(6509):1318-1330
pubmed: 32913098
J Biol Chem. 2007 Nov 2;282(44):32185-92
pubmed: 17827158
Science. 2002 Mar 22;295(5563):2258-61
pubmed: 11910109
Biomed Res Int. 2019 Mar 24;2019:8987268
pubmed: 31019974
Int J Mol Sci. 2021 May 21;22(11):
pubmed: 34064134
Bone. 2021 Feb;143:115760
pubmed: 33220505
Nucl Recept Signal. 2007 Aug 03;5:e006
pubmed: 17710122
Neurosurg Focus. 2011 Mar;30(3):E1
pubmed: 21434817
BMC Cancer. 2019 Jun 13;19(1):577
pubmed: 31196010
Nat Rev Genet. 2016 May;17(5):272-83
pubmed: 27040487
EMBO J. 2005 Apr 20;24(8):1584-95
pubmed: 15933721
Spine (Phila Pa 1976). 2012 Mar 1;37(5):E309-14
pubmed: 22146284
Nucleic Acids Res. 2020 Jan 8;48(D1):D127-D131
pubmed: 31504780
Int Orthop. 2019 Apr;43(4):797-805
pubmed: 30116867
Nat Biomed Eng. 2022 Nov 21;:
pubmed: 36411359
Genes Dev. 2007 Mar 1;21(5):519-24
pubmed: 17344413
J Bone Metab. 2014 May;21(2):127-32
pubmed: 25006569
Nucleic Acids Res. 2023 Jan 6;51(D1):D977-D985
pubmed: 36350656
Trends Biochem Sci. 2003 Sep;28(9):464-6
pubmed: 13678954
Nucleic Acids Res. 2017 Jan 4;45(D1):D896-D901
pubmed: 27899670
Bone. 2021 Feb;143:115791
pubmed: 33285257
Inflamm Regen. 2021 Mar 10;41(1):8
pubmed: 33691789
Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13906-11
pubmed: 18784367
Science. 2015 May 8;348(6235):648-60
pubmed: 25954001
Cell. 2006 Sep 22;126(6):1203-17
pubmed: 16990141
Am J Hum Genet. 2016 Jul 7;99(1):202-7
pubmed: 27374772