Entwined African and Asian genetic roots of medieval peoples of the Swahili coast.


Journal

Nature
ISSN: 1476-4687
Titre abrégé: Nature
Pays: England
ID NLM: 0410462

Informations de publication

Date de publication:
03 2023
Historique:
received: 07 07 2022
accepted: 24 01 2023
medline: 31 3 2023
entrez: 29 3 2023
pubmed: 30 3 2023
Statut: ppublish

Résumé

The urban peoples of the Swahili coast traded across eastern Africa and the Indian Ocean and were among the first practitioners of Islam among sub-Saharan people

Identifiants

pubmed: 36991187
doi: 10.1038/s41586-023-05754-w
pii: 10.1038/s41586-023-05754-w
pmc: PMC10060156
doi:

Substances chimiques

DNA, Ancient 0

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

866-873

Subventions

Organisme : National Science Foundation
ID : BCS 1123091

Informations de copyright

© 2023. The Author(s).

Références

Wynne-Jones, S. & LaViolette, A. J. The Swahili World (Routledge, 2017).
Kusimba, C. M. The Rise and Fall of Swahili States (Altamira Press, 1999).
Spear, T. T. The Shirazi in Swahili traditions, culture and history. Hist. Afr. 11, 291–305 (1984).
doi: 10.2307/3171638
Sheriff, A. Slaves, Spices and Ivory in Zanzibar. Integration of an East African Commercial Empire into the World Economy, 1770–1873 (James Currey, 1987).
Spear, T. Early Swahili history reconsidered. Int. J. Afr. Hist. Stud. 33, 257–290 (2000).
doi: 10.2307/220649
Kusimba, C. M. in State Formations: Global Histories and Cultures of Statehood (eds Anderson, G., Brooke, J. L. & Strauss, J. C.) 90–107 (Cambridge Univ. Press, 2018).
Fleisher, J. & Wynne-Jones, S. Ceramics and the early Swahili: deconstructing the early Tana tradition. Afr. Archaeol. Rev. 28, 245–278 (2011).
doi: 10.1007/s10437-011-9104-6
Pollard, E. & Kinyera, O. C. The Swahili Coast and the Indian Ocean trade patterns in the 7th–10th centuries CE. J. S. Afr. Stud. 43, 927–947 (2017).
doi: 10.1080/03057070.2017.1345266
Horton, M. C. Shanga: An Early Muslim Trading Community on the Coast of Eastern Africa, Vol. 14. (British Institute in Eastern Africa, 1996).
Fleisher, J. et al. When did the Swahili become maritime? Am. Anthropol. 117, 100–115 (2015).
pubmed: 25821235 pmcid: 4368416 doi: 10.1111/aman.12171
Wynne-Jones, S. A Material Culture: Consumption and Materiality on the Coast of Precolonial East Africa (Oxford Univ. Press, 2016).
Vernet, T. Le territoire hors les murs des cités-états Swahili de l’Archipel de Lamu, 1600–1800. J. Afr. 74, 381–411 (2004).
Glassman, J. Feasts and Riot: Revelry, Rebellion, and Popular Consciousness on the Swahili Coast 1856–1888 (James Currey, 1995).
Caplan, P. ‘But the coast, of course, is quite different’: academic and local Ideas about the East African littoral. J. East. Afr. Stud. 1, 305–320 (2007).
doi: 10.1080/17531050701452663
Freeman-Grenville, G. S. P. The East African Coast. Select Documents from the First to the Earlier Nineteenth Centuries (Clarendon Press, 1962).
Chittick, H. N. in East Africa and the Orient: Cultural Syntheses in Pre-Colonial Times eds Chittick, H. N. & Rotberg, R. I.) 16–43 (Africana, 1975).
Pouwels, R. L. Horn and Crescent. Cultural change and traditional Islam on the East African coast, 800–1900. African Studies Series, Vol. 53. (Cambridge Univ. Press, 1987).
Saad, E. Kilwa dynastic historiography: a critical study. Hist. Afr. 6, 177–209 (1979).
doi: 10.2307/3171745
Crowther, A. et al. Subsistence mosaics, forager-farmer interactions, and the transition to food production in eastern Africa. Quat. Int. 489, 101–120 (2018).
doi: 10.1016/j.quaint.2017.01.014
Nurse, D. & Spear, T. The Swahili: Reconstructing the History and Language of an African Society, 800–1500 (Univ. of Pennsylvania Press, 1985).
Raaum, R. L. et al. in The Swahili World (eds Wynne-Jones, S. & LaViolette, A. J.) 81–102 (Routledge, 2017).
Kusimba, C. M., Kusimba, S. B. & Dussubieux, L. Beyond the coastalscapes: preindustrial social and political networks in East Africa. Afr. Archaeol. Rev. 30, 399–426 (2013).
doi: 10.1007/s10437-013-9133-4
Skoglund, P. et al. Reconstructing prehistoric African population structure. Cell 171, 59–71.e21 (2017).
pubmed: 28938123 pmcid: 5679310 doi: 10.1016/j.cell.2017.08.049
Prendergast Mary, E. et al. Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa. Science 365, eaaw6275 (2019).
pubmed: 31147405 pmcid: 6827346 doi: 10.1126/science.aaw6275
Mathieson, I. & Scally, A. What is ancestry? PLoS Genet. 16, e1008624 (2020).
pubmed: 32150538 pmcid: 7082057 doi: 10.1371/journal.pgen.1008624
Patterson, N. et al. Ancient admixture in human history. Genetics 192, 1065–1093 (2012).
pubmed: 22960212 pmcid: 3522152 doi: 10.1534/genetics.112.145037
Quintana-Murci, L. et al. Where West meets East: the complex mtDNA landscape of the Southwest and Central Asian Corridor. Am. J. Hum. Genet. 74, 827–845 (2004).
pubmed: 15077202 pmcid: 1181978 doi: 10.1086/383236
Gandini, F. et al. Mapping human dispersals into the Horn of Africa from Arabian Ice Age refugia using mitogenomes. Sci. Rep. 6, 25472 (2016).
pubmed: 27146119 pmcid: 4857117 doi: 10.1038/srep25472
Cadenas, A. M. et al. Y-chromosome diversity characterizes the Gulf of Oman. Eur. J. Hum. Genet. 16, 374–386 (2008).
pubmed: 17928816 doi: 10.1038/sj.ejhg.5201934
Chintalapati, M., Patterson, N. & Moorjani, P. The spatiotemporal patterns of major human admixture events during the European Holocene. eLife 11, e77625 (2022).
pubmed: 35635751 pmcid: 9293011 doi: 10.7554/eLife.77625
Narasimhan Vagheesh, M. et al. The formation of human populations in South and Central Asia. Science 365, eaat7487 (2019).
pubmed: 31488661 pmcid: 6822619 doi: 10.1126/science.aat7487
Brucato, N. et al. The Comoros show the earliest Austronesian gene flow into the Swahili Corridor. Am. J. Hum. Genet. 102, 58–68 (2018).
pubmed: 29304377 pmcid: 5777450 doi: 10.1016/j.ajhg.2017.11.011
Horton, M., Olsen, J., Fleisher, J. & Wynne-Jones, S. The chronology of Kilwa Kisiwani, AD 800–1500. Afr. Archaeol. Rev. 39, 143–166 (2022).
doi: 10.1007/s10437-022-09476-8
Lansing, J. S. et al. Kinship structures create persistent channels for language transmission. Proc. Natl Acad. Sci. USA 114, 12910–12915 (2017).
pubmed: 29158378 pmcid: 5724253 doi: 10.1073/pnas.1706416114
Haspelmath, M. & Tadmor, U. Loanwords in the World’s Languages : A Comparative Handbook (De Gruyter Mouton, 2009).
LaViolette, A. & Fleisher, J. B. Developments in rural life on the Eastern African coast, A.D. 700–1500. J. Field Archaeol. 43, 380–398 (2018).
doi: 10.1080/00934690.2018.1489661
Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl Acad. Sci. USA 110, 15758–15763 (2013).
pubmed: 24019490 pmcid: 3785785 doi: 10.1073/pnas.1314445110
Rohland, N. et al. Partial uracil-DNA-glycosylase treatment for screening of ancient DNA. Philos. Trans. R. Soc. Lond. B 370, 20130624–20130624 (2015).
doi: 10.1098/rstb.2013.0624
Fu, Q. et al. An early modern human from Romania with a recent Neanderthal ancestor. Nature 524, 216–219 (2015).
pubmed: 26098372 pmcid: 4537386 doi: 10.1038/nature14558
Maricic, T., Whitten, M. & Pääbo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE 5, e14004–e14004 (2010).
pubmed: 21103372 pmcid: 2982832 doi: 10.1371/journal.pone.0014004
Li, H. & Durbin, R. Fast and accurate long-read alignment with Burrows–Wheeler transform. Bioinformatics 26, 589–595 (2010).
pubmed: 20080505 pmcid: 2828108 doi: 10.1093/bioinformatics/btp698
Behar, DoronM. et al. A “Copernican” reassessment of the human mitochondrial DNA tree from its root. Am. J. Hum. Genet. 90, 675–684 (2012).
pubmed: 22482806 pmcid: 3322232 doi: 10.1016/j.ajhg.2012.03.002
Fu, Q. et al. DNA analysis of an early modern human from Tianyuan Cave, China. Proc. Natl Acad. Sci. USA 110, 2223–2227 (2013).
pubmed: 23341637 pmcid: 3568306 doi: 10.1073/pnas.1221359110
Korneliussen, T. S., Albrechtsen, A. & Nielsen, R. ANGSD: analysis of next generation sequencing data. BMC Bioinformatics 15, 356 (2014).
pubmed: 25420514 pmcid: 4248462 doi: 10.1186/s12859-014-0356-4
Monroy Kuhn, J. M., Jakobsson, M. & Günther, T. Estimating genetic kin relationships in prehistoric populations. PLoS ONE 13, e0195491 (2018).
pubmed: 29684051 pmcid: 5912749 doi: 10.1371/journal.pone.0195491
Reiff, R. E. et al. METTL23, a transcriptional partner of GABPA, is essential for human cognition. Hum. Mol. Genet. 23, 3456–3466 (2014).
pubmed: 24501276 pmcid: 4049305 doi: 10.1093/hmg/ddu054
Patterson, N., Price, A. L. & Reich, D. Population structure and eigenanalysis. PLoS Genet. 2, e190 (2006).
pubmed: 17194218 pmcid: 1713260 doi: 10.1371/journal.pgen.0020190
Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009).
pubmed: 19648217 pmcid: 2752134 doi: 10.1101/gr.094052.109
Chang, C. C. et al. Second-generation PLINK: rising to the challenge of larger and richer datasets. GigaScience 4, 7 (2015).
pubmed: 25722852 pmcid: 4342193 doi: 10.1186/s13742-015-0047-8
Weissensteiner, H. et al. HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic Acids Res. 44, W58–W63 (2016).
pubmed: 27084951 pmcid: 4987869 doi: 10.1093/nar/gkw233
Lazaridis, I. et al. The genetic history of the Southern Arc: A bridge between West Asia and Europe. Science 377, eabm4247 (2022).
pubmed: 36007055 doi: 10.1126/science.abm4247
Mathieson, I. et al. The genomic history of southeastern Europe. Nature 555, 197–203 (2018).
pubmed: 29466330 pmcid: 6091220 doi: 10.1038/nature25778
Moorjani, P. et al. A genetic method for dating ancient genomes provides a direct estimate of human generation interval in the last 45,000 years. Proc. Natl Acad. Sci. USA 113, 5652 (2016).
pubmed: 27140627 pmcid: 4878468 doi: 10.1073/pnas.1514696113
Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409–413 (2014).
pubmed: 25230663 pmcid: 4170574 doi: 10.1038/nature13673
Lazaridis, I. et al. Genomic insights into the origin of farming in the ancient Near East. Nature 536, 419–424 (2016).
pubmed: 27459054 pmcid: 5003663 doi: 10.1038/nature19310
Nakatsuka, N. et al. The promise of discovering population-specific disease-associated genes in South Asia. Nat. Genet. 49, 1403–1407 (2017).
pubmed: 28714977 pmcid: 5675555 doi: 10.1038/ng.3917

Auteurs

Esther S Brielle (ES)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA. ebrielle@fas.harvard.edu.

Jeffrey Fleisher (J)

Department of Anthropology, Rice University, Houston, TX, USA. jfleisher@rice.edu.

Stephanie Wynne-Jones (S)

Department of Archaeology, University of York, York, UK. stephanie.wynne-jones@york.ac.uk.
University of South Africa, Pretoria, South Africa. stephanie.wynne-jones@york.ac.uk.

Kendra Sirak (K)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.

Nasreen Broomandkhoshbacht (N)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Kim Callan (K)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Elizabeth Curtis (E)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Lora Iliev (L)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Ann Marie Lawson (AM)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Jonas Oppenheimer (J)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.

Lijun Qiu (L)

Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

Kristin Stewardson (K)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

J Noah Workman (JN)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.

Fatma Zalzala (F)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.

George Ayodo (G)

Jaramogi Oginga Odinga University of Science and Technology, Bondo, Kenya.

Agness O Gidna (AO)

National Museums of Tanzania, Dar es Salaam, Tanzania.

Angela Kabiru (A)

Department of Archaeology, National Museums of Kenya, Nairobi, Kenya.
British Institute of Eastern Africa, Nairobi, Kenya.

Amandus Kwekason (A)

National Museums of Tanzania, Dar es Salaam, Tanzania.

Audax Z P Mabulla (AZP)

Department of Archaeology and Heritage Studies, University of Dar es Salaam, Dar es Salaam, Tanzania.

Fredrick K Manthi (FK)

Department of Earth Sciences, National Museums of Kenya, Nairobi, Kenya.

Emmanuel Ndiema (E)

Department of Earth Sciences, National Museums of Kenya, Nairobi, Kenya.

Christine Ogola (C)

Department of Earth Sciences, National Museums of Kenya, Nairobi, Kenya.

Elizabeth Sawchuk (E)

Cleveland Museum of Natural History, Cleveland, OH, USA.
Department of Anthropology, University of Alberta, Edmonton, Alberta, Canada.
Department of Anthropology, Stony Brook University, Stony Brook, NY, USA.

Lihadh Al-Gazali (L)

Department of Genetics and Genomics, College of Medicine and Health Sciences, United Arab Emirates University, Al-Ain, United Arab Emirates.

Bassam R Ali (BR)

Department of Genetics and Genomics, College of Medicine and Health Sciences, United Arab Emirates University, Al-Ain, United Arab Emirates.

Salma Ben-Salem (S)

Department of Genetics and Genomics, College of Medicine and Health Sciences, United Arab Emirates University, Al-Ain, United Arab Emirates.

Thierry Letellier (T)

Laboratoire Evolution et Santé Orale, Faculté de Chirurgie Dentaire, Université Toulouse III-Paul Sabatier, Toulouse, France.

Denis Pierron (D)

Laboratoire Evolution et Santé Orale, Faculté de Chirurgie Dentaire, Université Toulouse III-Paul Sabatier, Toulouse, France.

Chantal Radimilahy (C)

Institut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo, Madagascar.

Jean-Aimé Rakotoarisoa (JA)

Institut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo, Madagascar.

Ryan L Raaum (RL)

Department of Anthropology, Lehman College and The Graduate Center, The City University of New York, New York, NY, USA.
The New York Consortium in Evolutionary Primatology, New York, NY, USA.

Brendan J Culleton (BJ)

Institutes of Energy and the Environment, The Pennsylvania State University, University Park, PA, USA.

Swapan Mallick (S)

Department of Genetics, Harvard Medical School, Boston, MA, USA.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA.
Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Nadin Rohland (N)

Department of Genetics, Harvard Medical School, Boston, MA, USA.

Nick Patterson (N)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Mohammed Ali Mwenje (MA)

National Museums of Kenya, Lamu Museums, Lamu, Kenya.

Khalfan Bini Ahmed (KB)

Coastal Archaeology, Gede National Monument, Gede, Kenya.

Mohamed Mchulla Mohamed (MM)

Coastal Archaeology, Fort Jesus Museum, Mombasa, Kenya.

Sloan R Williams (SR)

Department of Anthropology, University of Illinois at Chicago, Chicago, IL, USA.

Janet Monge (J)

University of Pennsylvania Museum of Archaeology and Anthropology, Philadelphia, PA, USA.

Sibel Kusimba (S)

Department of Anthropology, University of South Florida, Tampa, FL, USA.

Mary E Prendergast (ME)

Department of Anthropology, Rice University, Houston, TX, USA.
Department of Genetics, Harvard Medical School, Boston, MA, USA.

David Reich (D)

Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA. reich@genetics.med.harvard.edu.
Department of Genetics, Harvard Medical School, Boston, MA, USA. reich@genetics.med.harvard.edu.
Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA. reich@genetics.med.harvard.edu.
Broad Institute of Harvard and MIT, Cambridge, MA, USA. reich@genetics.med.harvard.edu.

Chapurukha M Kusimba (CM)

Department of Archaeology, National Museums of Kenya, Nairobi, Kenya. ckusimba@usf.edu.
Department of Anthropology, University of South Florida, Tampa, FL, USA. ckusimba@usf.edu.
Institute of African Studies, University of Nairobi, Museum Hill, Nairobi, Kenya. ckusimba@usf.edu.

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