Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems.

Cancer eco-evolution Individual-based models Mathematical oncology Spatial moments Spatio-temporal point processes

Journal

Journal of mathematical biology
ISSN: 1432-1416
Titre abrégé: J Math Biol
Pays: Germany
ID NLM: 7502105

Informations de publication

Date de publication:
05 04 2023
Historique:
received: 15 06 2022
accepted: 09 03 2023
revised: 13 01 2023
medline: 7 4 2023
entrez: 5 4 2023
pubmed: 6 4 2023
Statut: epublish

Résumé

Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics generated by a specific family of IBMs, namely spatio-temporal point processes (STPPs). SCMs are spatially resolved population models formulated by a system of differential equations that approximate the dynamics of two STPP-generated summary statistics: first-order spatial cumulants (densities), and second-order spatial cumulants (spatial covariances). We exemplify how SCMs can be used in mathematical oncology by modelling theoretical cancer cell populations comprising interacting growth factor-producing and non-producing cells. To formulate model equations, we use computational tools that enable the generation of STPPs, SCMs and mean-field population models (MFPMs) from user-defined model descriptions (Cornell et al. Nat Commun 10:4716, 2019). To calculate and compare STPP, SCM and MFPM-generated summary statistics, we develop an application-agnostic computational pipeline. Our results demonstrate that SCMs can capture STPP-generated population density dynamics, even when MFPMs fail to do so. From both MFPM and SCM equations, we derive treatment-induced death rates required to achieve non-growing cell populations. When testing these treatment strategies in STPP-generated cell populations, our results demonstrate that SCM-informed strategies outperform MFPM-informed strategies in terms of inhibiting population growths. We thus demonstrate that SCMs provide a new framework in which to study cell-cell interactions, and can be used to describe and perturb STPP-generated cell population dynamics. We, therefore, argue that SCMs can be used to increase IBMs' applicability in cancer research.

Identifiants

pubmed: 37017776
doi: 10.1007/s00285-023-01903-x
pii: 10.1007/s00285-023-01903-x
pmc: PMC10076412
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

68

Subventions

Organisme : NCI NIH HHS
ID : R37 CA244613
Pays : United States

Informations de copyright

© 2023. The Author(s).

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Auteurs

Sara Hamis (S)

Tampere Institute for Advanced Study, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. sara.hamis@tuni.fi.
Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland. sara.hamis@tuni.fi.

Panu Somervuo (P)

Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.

J Arvid Ågren (JA)

Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.
Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA.

Dagim Shiferaw Tadele (DS)

Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA.
Department for Medical Genetics, Oslo University Hospital, Ullevål, Oslo, Norway.

Juha Kesseli (J)

Prostate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University and Tays Cancer Centre, Tampere, Finland.

Jacob G Scott (JG)

Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA.
Case Western Reserve School of Medicine, Cleveland, OH, USA.
Department of Radiation Oncology, Cleveland Clinic, Cleveland, OH, USA.

Matti Nykter (M)

Prostate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University and Tays Cancer Centre, Tampere, Finland.
Foundation for the Finnish Cancer Institute, Helsinki, Finland.

Philip Gerlee (P)

Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden.
Mathematical Sciences, University of Gothenburg, Gothenburg, Sweden.

Dmitri Finkelshtein (D)

Department of Mathematics, Faculty of Science and Engineering, Swansea University, Swansea, UK.

Otso Ovaskainen (O)

Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.
Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, Norway.

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