Making in silico predictive models for toxicology FAIR.

FAIR In silico model New approach methodologies Next generation risk assessment PBK QSAR Toxicology

Journal

Regulatory toxicology and pharmacology : RTP
ISSN: 1096-0295
Titre abrégé: Regul Toxicol Pharmacol
Pays: Netherlands
ID NLM: 8214983

Informations de publication

Date de publication:
May 2023
Historique:
received: 03 01 2023
revised: 18 02 2023
accepted: 07 04 2023
medline: 25 4 2023
pubmed: 11 4 2023
entrez: 10 4 2023
Statut: ppublish

Résumé

In silico predictive models for toxicology include quantitative structure-activity relationship (QSAR) and physiologically based kinetic (PBK) approaches to predict physico-chemical and ADME properties, toxicological effects and internal exposure. Such models are used to fill data gaps as part of chemical risk assessment. There is a growing need to ensure in silico predictive models for toxicology are available for use and that they are reproducible. This paper describes how the FAIR (Findable, Accessible, Interoperable, Reusable) principles, developed for data sharing, have been applied to in silico predictive models. In particular, this investigation has focussed on how the FAIR principles could be applied to improved regulatory acceptance of predictions from such models. Eighteen principles have been developed that cover all aspects of FAIR. It is intended that FAIRification of in silico predictive models for toxicology will increase their use and acceptance.

Identifiants

pubmed: 37037390
pii: S0273-2300(23)00053-3
doi: 10.1016/j.yrtph.2023.105385
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

105385

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Mark T D Cronin (MTD)

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool, L3 3AF, UK. Electronic address: m.t.cronin@ljmu.ac.uk.

Samuel J Belfield (SJ)

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool, L3 3AF, UK.

Katharine A Briggs (KA)

Lhasa Limited, Granary Wharf House, 2 Canal Wharf, Holbeck, Leeds, LS11 5PS, UK.

Steven J Enoch (SJ)

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool, L3 3AF, UK.

James W Firman (JW)

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool, L3 3AF, UK.

Markus Frericks (M)

BASF SE, APD/ET - Li 444, Speyerer St 2, 67117, Limburgerhof, Germany.

Clare Garrard (C)

ELIXIR, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.

Peter H Maccallum (PH)

ELIXIR, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.

Judith C Madden (JC)

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool, L3 3AF, UK.

Manuel Pastor (M)

Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Dept. of Medicine and Life Sciences (MELIS), Universitat Pompeu Fabra, Carrer Dr. Aiguader 88, 08003, Barcelona, Spain.

Ferran Sanz (F)

Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Dept. of Medicine and Life Sciences (MELIS), Universitat Pompeu Fabra, Carrer Dr. Aiguader 88, 08003, Barcelona, Spain.

Inari Soininen (I)

Synapse Research Management Partners SL, Calle Velazquez 94, planta 1, 28006, Madrid, Spain.

Despoina Sousoni (D)

ELIXIR, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.

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Classifications MeSH