A Rapid, Functional sgRNA Screening Method for Generating Murine RET and NTRK1 Fusion Oncogenes.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
06 Apr 2023
Historique:
medline: 18 4 2023
entrez: 17 4 2023
pubmed: 18 4 2023
Statut: epublish

Résumé

CRISPR/Cas9 gene editing technology is an indispensable and powerful tool in the field of cancer biology. To conduct successful CRISPR-based experiments, it is crucial that sgRNAs generate their designed alterations. Here, we describe a simple and efficient sgRNA screening method for validating sgRNAs that generate oncogenic gene rearrangements. We used IL3-independence in Ba/F3 cells as an assay to identify sgRNA pairs that generate fusion oncogenes involving the

Identifiants

pubmed: 37066347
doi: 10.1101/2023.04.06.535912
pmc: PMC10104125
pii:
doi:

Types de publication

Preprint

Langues

eng

Commentaires et corrections

Type : UpdateIn

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Auteurs

Laura Schubert (L)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Anh T Le (AT)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Trista K Hinz (TK)

Department of Craniofacial Biology, University of Colorado Anschutz Medical Campus, Aurora, CO.

Andre Navarro (A)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Sarah K Nelson-Taylor (SK)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Raphael A Nemenoff (RA)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Lynn E Heasley (LE)

Department of Craniofacial Biology, University of Colorado Anschutz Medical Campus, Aurora, CO.
Eastern Colorado VA Healthcare System, Rocky Mountain Regional VA Medical Center, Aurora, CO.

Robert C Doebele (RC)

Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO.

Classifications MeSH