Nuclear envelope dynamics in connection to chromatin remodeling.
chromatin
cytoskeleton
epigenetics
mechanical cues
nuclear envelope
nucleoskeleton
Journal
The Plant journal : for cell and molecular biology
ISSN: 1365-313X
Titre abrégé: Plant J
Pays: England
ID NLM: 9207397
Informations de publication
Date de publication:
17 Apr 2023
17 Apr 2023
Historique:
revised:
29
03
2023
received:
30
12
2022
accepted:
12
04
2023
pubmed:
18
4
2023
medline:
18
4
2023
entrez:
17
4
2023
Statut:
aheadofprint
Résumé
The nucleus is a central organelle of eukaryotic cells undergoing dynamic structural changes during cellular fundamental processes such as proliferation and differentiation. These changes rely on the integration of developmental and stress signals at the nuclear envelope (NE), orchestrating responses at the nucleo-cytoplasmic interface for efficient genomic functions such as DNA transcription, replication and repair. While in animals, correlation has already been established between NE dynamics and chromatin remodeling using last-generation tools and cutting-edge technologies, this topic is just emerging in plants, especially in response to mechanical cues. This review summarizes recent data obtained in this field with more emphasis on the mechanical stress response. It also highlights similarities/differences between animal and plant cells at multiples scales, from the structural organization of the nucleo-cytoplasmic continuum to the functional impacts of NE dynamics.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Agence Nationale de la Recherche
ID : ANR-18-CE20-0011 project REWIRE
Organisme : Agence Nationale de la Recherche
ID : ANR-20-CE13-0025 project MechaNUC
Organisme : Centre National de la Recherche Scientifique
Organisme : Human Frontier Science Program
ID : RGP 0009/2018
Informations de copyright
© 2023 Society for Experimental Biology and John Wiley & Sons Ltd.
Références
Alam, S.G., Zhang, Q., Prasad, N., Li, Y., Chamala, S., Kuchibhotla, R. et al. (2016) The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity. Scientific Reports, 6, 38063.
Alisafaei, F., Jokhun, D.S., Shivashankar, G.V. & Shenoy, V.B. (2019) Regulation of nuclear architecture, mechanics, and nucleocytoplasmic shuttling of epigenetic factors by cell geometric constraints. Proceedings of the National Academy of Sciences of the United States of America, 116, 13200-13209.
Allen, J.R. & Strader, L.C. (2021) Nucleocytoplasmic partitioning as a mechanism to regulate Arabidopsis signaling events. Current Opinion in Cell Biology, 69, 136-141.
Ambrose, C. & Wasteneys, G.O. (2014) Microtubule initiation from the nuclear surface controls cortical microtubule growth polarity and orientation in Arabidopsis thaliana. Plant & Cell Physiology, 55, 1636-1645.
Amin, R., Shukla, A., Zhu, J.J., Kim, S., Wang, P., Tian, S.Z. et al. (2021) Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response. Nature Communications, 12, 7216.
Arsenovic, P.T., Ramachandran, I., Bathula, K., Zhu, R., Narang, J.D., Noll, N.A. et al. (2016) Nesprin-2G, a component of the nuclear LINC complex, is subject to myosin-dependent tension. Biophysical Journal, 110, 34-43.
Aureille, J., Buffiere-Ribot, V., Harvey, B.E., Boyault, C., Pernet, L., Andersen, T. et al. (2019) Nuclear envelope deformation controls cell cycle progression in response to mechanical force. EMBO Reports, 20, e48084.
Banerjee, I., Zhang, J., Moore-Morris, T., Pfeiffer, E., Buchholz, K.S., Liu, A. et al. (2014) Targeted ablation of nesprin 1 and nesprin 2 from murine myocardium results in cardiomyopathy, altered nuclear morphology and inhibition of the biomechanical gene response. PLoS Genetics, 10, e1004114.
Barneche, F. & Baroux, C. (2017) Unreeling the chromatin thread: a genomic perspective on organization around the periphery of the Arabidopsis nucleus. Genome Biology, 18, 97.
Batzenschlager, M., Lermontova, I., Schubert, V., Fuchs, J., Berr, A., Koini, M.A. et al. (2015) Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture. Proceedings of the National Academy of Sciences of the United States of America, 112, 8656-8660.
Batzenschlager, M., Masoud, K., Janski, N., Houlné, G., Herzog, E., Evrard, J.L. et al. (2013) The GIP gamma-tubulin complex-associated proteins are involved in nuclear architecture in Arabidopsis thaliana. Frontiers in Plant Science, 4, 480.
Beaudouin, J., Gerlich, D., Daigle, N., Eils, R. & Ellenberg, J. (2002) Nuclear envelope breakdown proceeds by microtubule-induced tearing of the lamina. Cell, 108, 83-96.
Bi, X., Cheng, Y.-J., Hu, B., Ma, X., Wu, R., Wang, J.-W. et al. (2017) Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery. Genome Research, 27, 1162-1173.
Bianchi, A. & Lanzuolo, C. (2015) Into the chromatin world: Role of nuclear architecture in epigenome regulation. American Institute of Mathematical Sciences Biophysics, 2, 585-612.
Biedzinski, S., Agsu, G., Vianay, B., Delord, M., Blanchoin, L., Larghero, J. et al. (2020) Microtubules control nuclear shape and gene expression during early stages of hematopoietic differentiation. The EMBO Journal, 39, e103957.
Biel, A., Moser, M. & Meier, I. (2020) Arabidopsis KASH proteins SINE1 and SINE2 are involved in microtubule reorganization during ABA-induced stomatal closure. Frontiers in Plant Science, 11, 575573.
Biel, A., Moser, M., Groves, N.R. & Meier, I. (2022) Distinct Roles for KASH Proteins SINE1 and SINE2 in Guard Cell Actin Reorganization, Calcium Oscillations, and Vacuolar Remodeling. Frontiers in Plant Science, 13, 784342.
Boruc, J., Zhou, X. & Meier, I. (2012) Dynamics of the plant nuclear envelope and nuclear pore. Plant Physiology, 158, 78-86.
Boumendil, C., Hari, P., Olsen, K.C.F., Acosta, J.C. & Bickmore, W.A. (2019) Nuclear pore density controls heterochromatin reorganization during senescence. Genes and Development, 33, 144-149.
Brachner, A. & Foisner, R. (2011) Evolvement of LEM proteins as chromatin tethers at the nuclear periphery. Biochemical Society Transactions, 39, 1735-1741.
Brenya, E., Pervin, M., Chen, Z.H., Tissue, D.T., Johnson, S., Braam, J. et al. (2022) Mechanical stress acclimation in plants: linking hormones and somatic memory to thigmomorphogenesis. Plant, Cell & Environment, 45, 989-1010.
Breuer, M. & Ohkura, H. (2015) A negative loop within the nuclear pore complex controls global chromatin organization. Genes and Development, 29, 1789-1794.
Brickner, D.G., Randise-Hinchliff, C., Lebrun Corbin, M., Liang, J.M., Kim, S., Sump, B. et al. (2019) The role of transcription factors and nuclear pore proteins in controlling the spatial organization of the yeast genome. Developmental Cell, 49, 936-947.e4.
Burke, B. (2019) Chain reaction: LINC complexes and nuclear positioning. F1000Res, 8.
Burke, B. & Roux, K.J. (2009) Nuclei take a position: managing nuclear location. Developmental Cell, 17, 587-597.
Cao, P., Kim, S.J., Xing, A., Schenck, C.A., Liu, L., Jiang, N. et al. (2019) Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis. eLife, 8, e50747.
Chen, C., Kim, D., Yun, H.R., Lee, Y.M., Yogendra, B., Bo, Z. et al. (2020) Nuclear import of LIKE HETEROCHROMATIN PROTEIN1 is redundantly mediated by importins alpha-1, alpha-2 and alpha-3. The Plant Journal, 103, 1205-1214.
Chi, Y.H., Haller, K., Peloponese, J.M., Jr. & Jeang, K.T. (2007) Histone acetyltransferase hALP and nuclear membrane protein hsSUN1 function in de-condensation of mitotic chromosomes. The Journal of Biological Chemistry, 282, 27447-27458.
Chiarini, F., Evangelisti, C., Cenni, V., Fazio, A., Paganelli, F., Martelli, A.M. et al. (2019) The cutting edge: the role of mTOR signaling in Laminopathies. International Journal of Molecular Sciences, 847, 1-28.
Cho, S., Irianto, J. & Discher, D.E. (2017) Mechanosensing by the nucleus: from pathways to scaling relationships. Journal of Cell Biology, 216, 305-315.
Choi, J., Strickler, S.R. & Richards, E.J. (2019) Loss of CRWN nuclear proteins induces cell death and salicylic acid defense signaling. Plant Physiology, 179, 1315-1329.
Chu, F.Y., Haley, S.C. & Zidovska, A. (2017) On the origin of shape fluctuations of the cell nucleus. Proceedings of the National Academy of Sciences of the United States of America, 114, 10338-10343.
Chugh, P. & Paluch, E.K. (2018) The Actin cortex at a glance. Journal of Cell Science, 131, jcs186254.
Ciska, M. & Moreno Diaz de la Espina, S. (2014) The intriguing plant nuclear lamina. Frontiers in Plant Science, 5, 166.
Colin, L. & Hamant, O. (2021) The plasma membrane as a mechanotransducer in plants. Comptes Rendus Biologies, 344, 389-407.
Colom, A., Derivery, E., Soleimanpour, S., Tomba, C., Molin, M.D., Sakai, N. et al. (2018) A fluorescent membrane tension probe. Nature Chemistry, 10, 1118-1125.
Cuevas-Velazquez, C.L., Vellosillo, T., Guadalupe, K., Schmidt, H.B., Yu, F., Moses, D. et al. (2021) Intrinsically disordered protein biosensor tracks the physical-chemical effects of osmotic stress on cells. Nature Communications, 12, 5438.
Dai, L., Wang, B., Wang, T., Meyer, E.H., Kettel, V., Hoffmann, N. et al. (2022) The TOR complex controls ATP levels to regulate Actin cytoskeleton dynamics in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 119, e2122969119.
De Belly, H., Paluch, E.K. & Chalut, K.J. (2022) Interplay between mechanics and signalling in regulating cell fate. Nature Reviews. Molecular Cell Biology, 23, 465-480.
Delarue, M., Brittingham, G.P., Pfeffer, S., Surovtsev, I.V., Pinglay, S., Kennedy, K.J. et al. (2018) mTORC1 controls phase separation and the biophysical properties of the cytoplasm by tuning crowding. Cell, 174, 338-349.e20.
Deolal, P. & Mishra, K. (2021) Regulation of diverse nuclear shapes: pathways working independently, together. Communicative & Integrative Biology, 14, 158-175.
Dogan, E.S. & Liu, C. (2018) Three-dimensional chromatin packing and positioning of plant genomes. Nature Plants, 4, 521-529.
Dong, Y., Uslu, V.V., Berr, A., Singh, G., Papdi, C., Steffens, V.A. et al. (2023) TOR represses stress responses through global regulation of H3K27 trimethylation in plants. Journal of Experimental Botany, 74, 1420-1431.
Dos Santos, A. & Toseland, C.P. (2021) Regulation of nuclear mechanics and the impact on DNA damage. International Journal of Molecular Sciences, 22, 3178.
Dupont, S. & Wickström, S.A. (2022) Mechanical regulation of chromatin and transcription. Nature Reviews Genetics, 23, 1-20.
Egecioglu, D. & Brickner, J.H. (2011) Gene positioning and expression. Current Opinion in Cell Biology, 23, 338-345.
Elosegui-Artola, A., Andreu, I., Beedle, A.E.M., Lezamiz, A., Uroz, M., Kosmalska, A.J. et al. (2017) Force triggers YAP nuclear entry by regulating transport across nuclear pores. Cell, 171, 1397-1410.e14.
Fal, K., Asnacios, A., Chabouté, M.E. & Hamant, O. (2017) Nuclear envelope: a new frontier in plant mechanosensing? Biophysical Reviews, 9, 389-403.
Fal, K., Korsbo, N., Alonso-Serra, J., Teles, J., Liu, M., Refahi, Y. et al. (2021) Tissue folding at the organ-meristem boundary results in nuclear compression and chromatin compaction. Proceedings of the National Academy of Sciences of the United States of America, 118, e2017859118.
Fal, K., Tomkova, D., Vachon, G., Chabouté, M.E., Berr, A. & Carles, C.C. (2021) Chromatin manipulation and editing: challenges, new technologies and their use in plants. International Journal of Molecular Sciences, 22, 512.
Feng, C.M., Qiu, Y., Van Buskirk, E.K., Yang, E.J. & Chen, M. (2014) Light-regulated gene repositioning in Arabidopsis. Nature Communications, 5, 3027.
Feng, W., Kita, D., Peaucelle, A., Cartwright, H.N., Doan, V., Duan, Q. et al. (2018) The FERONIA receptor kinase maintains Cell-Wall integrity during salt stress through Ca(2+) signaling. Current Biology, 28, 666, e665-675.
Figueiras, E., Silvestre, O.F., Ihalainen, T.O. & Nieder, J.B. (2019) Phasor-assisted nanoscopy reveals differences in the spatial organization of major nuclear lamina proteins. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1866, 118530.
Finan, J.D. & Guilak, F. (2010) The effects of osmotic stress on the structure and function of the cell nucleus. Journal of Cellular Biochemistry, 109, 460-467.
Fischer, T., Hayn, A. & Mierke, C.T. (2020) Effect of nuclear stiffness on cell mechanics and migration of human breast cancer cells. Frontiers in Cell and Development Biology, 8, 393.
Fransz, P., De Jong, J.H., Lysak, M., Castiglione, M.R. & Schubert, I. (2002) Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate. Proceedings of the National Academy of Sciences of the United States of America, 99, 14584-14589.
Gerlitz, G. & Bustin, M. (2010) Efficient cell migration requires global chromatin condensation. Journal of Cell Science, 123, 2207-2217.
Ghosh, S., Cuevas, V.C., Seelbinder, B. & Neu, C.P. (2021) Image-based elastography of heterochromatin and euchromatin domains in the deforming cell nucleus. Small, 17, e2006109.
Goswami, R., Asnacios, A., Hamant, O. & Chaboute, M.E. (2020) Is the plant nucleus a mechanical rheostat? Current Opinion in Plant Biology, 57, 155-163.
Goswami, R., Asnacios, A., Milani, P., Graindorge, S., Houlné, G., Mutterer, J. et al. (2020) Mechanical shielding in plant nuclei. Current Biology, 30, 2013-2025.e2013.
Goto, C., Hara-Nishimura, I. & Tamura, K. (2021) Regulation and physiological significance of the nuclear shape in plants. Frontiers in Plant Science, 12, 673905.
Goto, C., Tamura, K., Fukao, Y., Shimada, T. & Hara-Nishimura, I. (2014) The novel nuclear envelope protein KAKU4 modulates nuclear morphology in Arabidopsis. Plant Cell, 26, 2143-2155.
Gozalo, A., Duke, A., Lan, Y., Pascual-Garcia, P., Talamas, J.A., Nguyen, S.C. et al. (2020) Core components of the nuclear pore bind distinct states of chromatin and contribute to Polycomb repression. Molecular Cell, 77, 67-81.e67.
Graham, D.M. & Burridge, K. (2016) Mechanotransduction and nuclear function. Current Opinion in Cell Biology, 40, 98-105.
Graumann, K. (2014) Evidence for LINC1-SUN associations at the plant nuclear periphery. PLoS One, 9, e93406.
Groves, N.R., Biel, A., Moser, M., Mendes, T., Amstutz, K. & Meier, I. (2020) Recent advances in understanding the biological roles of the plant nuclear envelope. Nucleus, 11, 330-346.
Gu, Y., Zebell, S.G., Liang, Z., Wang, S., Kang, B.H. & Dong, X. (2016) Nuclear pore permeabilization is a convergent signaling event in effector-triggered immunity. Cell, 166, 1526-1538.e11.
Guilluy, C., Osborne, L.D., Van Landeghem, L., Sharek, L., Superfine, R., Garcia-Mata, R. et al. (2014) Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus. Nature Cell Biology, 16, 376-381.
Hakhverdyan, Z., Molloy, K.R., Keegan, S., Herricks, T., Lepore, D.M., Munson, M. et al. (2021) Dissecting the structural dynamics of the nuclear pore complex. Molecular Cell, 81, 153-165.e7.
Hamant, O., Heisler, M.G., Jonsson, H., Krupinski, P., Uyttewaal, M., Bokov, P. et al. (2008) Developmental patterning by mechanical signals in Arabidopsis. Science, 322, 1650-1655.
Hamant, O., Inoue, D., Bouchez, D., Dumais, J. & Mjolsness, E. (2019) Are microtubules tension sensors? Nature Communications, 10, 2360.
Hamilton, E.S., Jensen, G.S., Maksaev, G., Katims, A., Sherp, A.M. & Haswell, E.S. (2015) Mechanosensitive channel MSL8 regulates osmotic forces during pollen hydration and germination. Science, 350, 438-441.
Harachi, M., Masui, K., Honda, H., Muragaki, Y., Kawamata, T., Cavenee, W.K. et al. (2020) Dual regulation of histone methylation by mTOR complexes controls glioblastoma tumor cell growth via EZH2 and SAM. Molecular Cancer Research, 18, 1142-1152.
Heo, S.J., Driscoll, T.P., Thorpe, S.D., Nerurkar, N.L., Baker, B.M., Yang, M.T. et al. (2016) Differentiation alters stem cell nuclear architecture, mechanics, and mechano-sensitivity. eLife, 5, e18207.
Hirakawa, T. & Matsunaga, S. (2019) Characterization of DNA repair foci in root cells of Arabidopsis in response to DNA damage. Frontiers in Plant Science, 10, 990.
Hoffmann, K., Sperling, K., Olins, A.L. & Olins, D.E. (2007) The granulocyte nucleus and Lamin B receptor: avoiding the ovoid. Chromosoma, 116, 227-235.
Hu, B., Wang, N., Bi, X., Karaaslan, E.S., Weber, A.-L., Zhu, W. et al. (2019) Plant Lamin-like proteins mediate chromatin tethering at the nuclear periphery. Genome Biology, 20, 87.
Jahed, Z., Soheilypour, M., Peyro, M. & Mofrad, M.R. (2016) The LINC and NPC relationship - it's complicated! Journal of Cell Science, 129, 3219-3229.
Jain, N., Iyer, K.V., Kumar, A. & Shivashankar, G.V. (2013) Cell geometric constraints induce modular gene-expression patterns via redistribution of HDAC3 regulated by actomyosin contractility. Proceedings of the National Academy of Sciences, 110, 11349-11354.
Janski, N., Masoud, K., Batzenschlager, M., Herzog, E., Evrard, J.L., Houlné, G. et al. (2012) The GCP3-interacting proteins GIP1 and GIP2 are required for γ-tubulin complex protein localization, spindle integrity, and chromosomal stability. Plant Cell, 24, 1171-1187.
Jevtic, P., Edens, L.J., Vukovic, L.D. & Levy, D.L. (2014) Sizing and shaping the nucleus: mechanisms and significance. Current Opinion in Cell Biology, 28, 16-27.
Joshi, R., Han, S.-B., Cho, W.-K. & Kim, D.-H. (2022) The role of cellular traction forces in deciphering nuclear mechanics. Biomaterials Research, 26, 43.
Kadota, S., Ou, J., Shi, Y., Lee, J.T., Sun, J. & Yildirim, E. (2020) Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding. Nature Communications, 11, 2606.
Kalukula, Y., Stephens, A.D., Lammerding, J. & Gabriele, S. (2022) Mechanics and functional consequences of nuclear deformations. Nature Reviews Molecular Cell Biology, 23, 583-602.
Kidiyoor, G.R., Li, Q., Bastianello, G., Bruhn, C., Giovannetti, I., Mohamood, A. et al. (2020) ATR is essential for preservation of cell mechanics and nuclear integrity during interstitial migration. Nature Communications, 11, 4828.
Kim, S.Y., Lee, J., Eshed-Williams, L., Zilberman, D. & Sung, Z.R. (2012) EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genetics, 8, e1002512.
Kirby, T.J. & Lammerding, J. (2018) Emerging views of the nucleus as a cellular mechanosensor. Nature Cell Biology, 20, 373-381.
Krull, S., Dorries, J., Boysen, B., Reidenbach, S., Magnius, L., Norder, H. et al. (2010) Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion. The EMBO Journal, 29, 1659-1673.
Kumar, A., Mazzanti, M., Mistrik, M., Kosar, M., Beznoussenko, G.V., Mironov, A.A. et al. (2014) ATR mediates a checkpoint at the nuclear envelope in response to mechanical stress. Cell, 158, 633-646.
Lamm, N., Read, M.N., Nobis, M., Van Ly, D., Page, S.G., Masamsetti, V.P. et al. (2020) Nuclear F-Actin counteracts nuclear deformation and promotes fork repair during replication stress. Nature Cell Biology, 22, 1460-1470.
Landrein, B., Kiss, A., Sassi, M., Chauvet, A., Das, P., Cortizo, M. et al. (2015) Mechanical stress contributes to the expression of the STM homeobox gene in Arabidopsis shoot meristems. eLife, 4, e07811.
Le, H.Q., Ghatak, S., Yeung, C.-Y.C., Tellkamp, F., Günschmann, C., Dieterich, C. et al. (2016) Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment. Nature Cell Biology, 18, 864-875.
Lee, J., Molley, T.G., Seward, C.H., Abdeen, A.A., Zhang, H., Wang, X. et al. (2020) Geometric regulation of histone state directs melanoma reprogramming. Communications Biology, 3, 341.
Li, G., Zhang, W., Zhou, X. & Yang, C. (2022) Mechanoceutical forces squeeze the epigenetic changes. Matter, 5, 3097-3099.
Lin, D.H. & Hoelz, A. (2019) The structure of the nuclear pore complex (An update). Annual Review of Biochemistry, 88, 725-783.
Liu, L., Simon, M., Muggiolu, G., Vilotte, F., Antoine, M., Caron, J. et al. (2022) Changes in intra-nuclear mechanics in response to DNA damaging agents revealed by time-domain Brillouin micro-spectroscopy. Photoacoustics, 27, 100385.
Lloyd, J.P.B. & Lister, R. (2022) Epigenome plasticity in plants. Nature Reviews. Genetics, 23, 55-68.
Lomakin, A.J., Cattin, C.J., Cuvelier, D., Alraies, Z., Molina, M., Nader, G.P.F. et al. (2020) The nucleus acts as a ruler tailoring cell responses to spatial constraints. Science, 370, eaba2894.
Long, J.T. & Lammerding, J. (2021) Nuclear deformation lets cells gauge their physical confinement. Developmental Cell, 56, 156-158.
Lopez-Andarias, J., Eblighatian, K., Pasquer, Q.T.L., Assies, L., Sakai, N., Hoogendoorn, S. et al. (2022) Photocleavable fluorescent membrane tension probes: fast release with spatiotemporal control in inner leaflets of plasma membrane, nuclear envelope, and secretory pathway. Angewandte Chemie (International Ed. in English), 61, e202113163.
Mansisidor, A.R. & Risca, V.I. (2022) Chromatin accessibility: methods, mechanisms, and biological insights. Nucleus, 13, 236-276.
Martins, R.P., Finan, J.D., Farshid, G. & Lee, D.A. (2012) Mechanical regulation of nuclear structure and function. Annual Review of Biomedical Engineering, 14, 431-455.
Masoud, K., Herzog, E., Chaboute, M.E. & Schmit, A.C. (2013) Microtubule nucleation and establishment of the mitotic spindle in vascular plant cells. The Plant Journal, 75, 245-257.
Masuda, K., Hikida, R. & Fujino, K. (2021) The plant nuclear lamina proteins NMCP1 and NMCP2 form a filamentous network with lateral filament associations. Journal of Experimental Botany, 72, 6190-6204.
Masuda, K., Xu, Z.J., Takahashi, S., Ito, A., Ono, M., Nomura, K. et al. (1997) Peripheral framework of carrot cell nucleus contains a novel protein predicted to exhibit a long alpha-helical domain. Experimental Cell Research, 232, 173-181.
Mathieu, S. & Manneville, J.-B. (2019) Intracellular mechanics: connecting rheology and mechanotransduction. Current Opinion in Cell Biology, 56, 34-44.
Matsuda, A. & Mofrad, M.R.K. (2022) On the nuclear pore complex and its emerging role in cellular mechanotransduction. APL Bioengineering, 6, 011504.
McColloch, A., Rabiei, M., Rabbani, P., Bowling, A. & Cho, M. (2019) Correlation between nuclear morphology and Adipogenic differentiation: application of a combined experimental and computational modeling approach. Scientific Reports, 9, 16381.
McCord, R.P., Nazario-Toole, A., Zhang, H., Chines, P.S., Zhan, Y., Erdos, M.R. et al. (2013) Correlated alterations in genome organization, histone methylation, and DNA-Lamin a/C interactions in Hutchinson-Gilford progeria syndrome. Genome Research, 23, 260-269.
Meier, I. (2016) LINCing the eukaryotic tree of life - towards a broad evolutionary comparison of nucleocytoplasmic bridging complexes. Journal of Cell Science, 129, 3523-3531.
Meier, I., Griffis, A.H., Groves, N.R. & Wagner, A. (2016) Regulation of nuclear shape and size in plants. Current Opinion in Cell Biology, 40, 114-123.
Mermet, S., Voisin, M., Mordier, J., Dubos, T., Tutois, S., Tuffery, P. et al. (2021) Evolutionary conserved protein motifs drive attachment of the plant nucleoskeleton at nuclear pores. bioRxiv 2021.2003.2020.435662.
Michels, L., Gorelova, V., Harnvanichvech, Y., Borst, J.W., Albada, B., Weijers, D. et al. (2020) Complete microviscosity maps of living plant cells and tissues with a toolbox of targeting mechanoprobes. Proceedings of the National Academy of Sciences of the United States of America, 117, 18110-18118.
Mikulski, P., Hohenstatt, M.L., Farrona, S., Smaczniak, C., Stahl, Y., Kalyanikrishna, K. et al. (2019) The chromatin-associated protein PWO1 interacts with plant nuclear Lamin-like components to regulate nuclear size. The Plant Cell, 31, 1141-1154.
Miroshnikova, Y.A., Cohen, I., Ezhkova, E. & Wickström, S.A. (2019) Epigenetic gene regulation, chromatin structure, and force-induced chromatin remodelling in epidermal development and homeostasis. Current Opinion in Genetics & Development, 55, 46-51.
Mitchison, T.J. (2019) Colloid osmotic parameterization and measurement of subcellular crowding. Molecular Biology of the Cell, 30, 173-180.
Nakagawa, Y., Katagiri, T., Shinozaki, K., Qi, Z., Tatsumi, H., Furuichi, T. et al. (2007) Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots. Proceedings of the National Academy of Sciences of the United States of America, 104, 3639-3644.
Nakamura, M., Yagi, N., Kato, T., Fujita, S., Kawashima, N., Ehrhardt, D.W. et al. (2012) Arabidopsis GCP3-interacting protein 1/MOZART 1 is an integral component of the gamma-tubulin-containing microtubule nucleating complex. Plant Journal, 71, 216-225.
Nava, M.M., Miroshnikova, Y.A., Biggs, L.C., Whitefield, D.B., Metge, F., Boucas, J. et al. (2020) Heterochromatin-driven nuclear softening protects the genome against mechanical stress-induced damage. Cell, 181, 800-817.e822.
Nguyen, V. & Gutzat, R. (2022) Epigenetic regulation in the shoot apical meristem. Current Opinion in Plant Biology, 69, 102267.
Nutzmann, H.W., Doerr, D., Ramirez-Colmenero, A., Sotelo-Fonseca, J.E., Wegel, E., Di Stefano, M. et al. (2020) Active and repressed biosynthetic gene clusters have spatially distinct chromosome states. Proceedings of the National Academy of Sciences of the United States of America, 117, 13800-13809.
Oda, Y. & Fukuda, H. (2011) Dynamics of Arabidopsis SUN proteins during mitosis and their involvement in nuclear shaping. The Plant Journal, 66, 629-641.
Pascual-Reguant, L., Blanco, E., Galan, S., Le Dily, F., Cuartero, Y., Serra-Bardenys, G. et al. (2018) Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains. Nature Communications, 9, 3420.
Pawar, V., Poulet, A., Détourné, G., Tatout, C., Vanrobays, E., Evans, D.E. et al. (2016) A novel family of plant nuclear envelope-associated proteins. Journal of Experimental Botany, 67, 5699-5710.
Pecinka, A., Chevalier, C., Colas, I., Kalantidis, K., Varotto, S., Krugman, T. et al. (2020) Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants. Journal of Experimental Botany, 71, 5205-5222.
Pieper, G.H., Sprenger, S., Teis, D. & Oliferenko, S. (2020) ESCRT-III/Vps4 controls heterochromatin-nuclear envelope attachments. Developmental Cell, 53, 27-41.
Pontvianne, F. & Liu, C. (2020) Chromatin domains in space and their functional implications. Current Opinion in Plant Biology, 54, 1-10.
Poulet, A., Duc, C., Voisin, M., Desset, S., Tutois, S., Vanrobays, E. et al. (2017) The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants. Journal of Cell Science, 130, 590-601.
Prevedel, R., Diz-Munoz, A., Ruocco, G. & Antonacci, G. (2019) Brillouin microscopy: an emerging tool for mechanobiology. Nature Methods, 16, 969-977.
Qin, L., He, T., Chen, S., Yang, D., Yi, W., Cao, H. et al. (2021) Roles of mechanosensitive channel Piezo1/2 proteins in skeleton and other tissues. Bone Researh, 9, 44.
Radin, I., Richardson, R.A., Coomey, J.H., Weiner, E.R., Bascom, C.S., Li, T. et al. (2021) Plant PIEZO homologs modulate vacuole morphology during tip growth. Science, 373, 586-590.
Ramos, F.J., Chen, S.C., Garelick, M.G., Dai, D.F., Liao, C.Y., Schreiber, K.H. et al. (2012) Rapamycin reverses elevated mTORC1 signaling in Lamin A/C-deficient mice, rescues cardiac and skeletal muscle function, and extends survival. Science Translational Medicine, 4, 144ra103.
Richards, L., Lord, C.L., Benton, M.L., Capra, J.A. & Nordman, J.T. (2022) Nucleoporins facilitate ORC loading onto chromatin. Cell Reports, 41, 111590.
Risca, V.I., Wang, E.B., Chaudhuri, O., Chia, J.J., Geissler, P.L. & Fletcher, D.A. (2012) Actin filament curvature biases branching direction. Proceedings of the National Academy of Sciences of the United States of America, 109, 2913-2918.
Romero, J.J., De Rossi, M.C., Oses, C., Echegaray, C.V., Verneri, P., Francia, M. et al. (2022) Nucleus-cytoskeleton communication impacts on OCT4-chromatin interactions in embryonic stem cells. BMC Biology, 20, 6.
Rullens, P.M.J. & Kind, J. (2021) Attach and stretch: emerging roles for genome-lamina contacts in shaping the 3D genome. Current Opinion in Cell Biology, 70, 51-57.
Sanghvi-Shah, R. & Weber, G.F. (2017) Intermediate filaments at the junction of Mechanotransduction, migration, and development. Frontiers in Cell and Development Biology, 5, 81.
Sankaran, J., Uzer, G., van Wijnen, A.J. & Rubin, J. (2019) Gene regulation through dynamic actin control of nuclear structure. Experimental Biology and Medicine, 244, 1345-1353.
Shah, P., Hobson, C.M., Cheng, S., Colville, M.J., Paszek, M.J., Superfine, R. et al. (2021) Nuclear deformation causes DNA damage by increasing replication stress. Current Biology, 31, 753-765.e756.
Shih, H.W., Miller, N.D., Dai, C., Spalding, E.P. & Monshausen, G.B. (2014) The receptor-like kinase FERONIA is required for mechanical signal transduction in Arabidopsis seedlings. Current Biology, 24, 1887-1892.
Shin, J.-W. (2018) Squeezing cells through the epigenetic machinery. Proceedings of the National Academy of Sciences of the United States of America, 115, 8472-8474.
Singh, G., Batzenschlager, M., Tomkova, D., Herzog, E., Hoffmann, E., Houlné, G. et al. (2021) GIP1 and GIP2 contribute to the maintenance of genome stability at the nuclear periphery. Frontiers in Plant Science, 12, 804928.
Singh, G., Pereira, D., Baudrey, S., Hoffmann, E., Ryckelynck, M., Asnacios, A. et al. (2021) Real-time tracking of root hair nucleus morphodynamics using a microfluidic approach. The Plant Journal, 108, 303-313.
Skinner, B.M. & Johnson, E.E. (2017) Nuclear morphologies: their diversity and functional relevance. Chromosoma, 126, 195-212.
Smith, L.G. (2003) Cytoskeletal control of plant cell shape: getting the fine points. Current Opinion in Plant Biology, 6, 63-73.
Smith, S., Galinha, C., Desset, S., Tolmie, F., Evans, D., Tatout, C. et al. (2015) Marker gene tethering by nucleoporins affects gene expression in plants. Nucleus, 6, 471-478.
Somssich, M., Khan, G.A. & Persson, S. (2016) Cell Wall heterogeneity in root development of Arabidopsis. Frontiers in Plant Science, 7, 1242.
Song, Y., Soto, J., Chen, B., Hoffman, T., Zhao, W., Zhu, N. et al. (2022) Transient nuclear deformation primes epigenetic state and promotes cell reprogramming. Nature Materials, 21, 1191-1199.
Song, Y., Soto, J. & Li, S. (2020) Mechanical regulation of histone modifications and cell plasticity. Current Opinion in Solid State & Materials Science, 24, 100872.
Stewart, C.L., Roux, K.J. & Burke, B. (2007) Blurring the boundary: the nuclear envelope extends its reach. Science, 318, 1408-1412.
Swift, J., Ivanovska, I.L., Buxboim, A., Harada, T., Dingal, P.C., Pinter, J. et al. (2013) Nuclear Lamin-a scales with tissue stiffness and enhances matrix-directed differentiation. Science, 341, 1240104.
Tajik, A., Zhang, Y., Wei, F., Sun, J., Jia, Q., Zhou, W. et al. (2016) Transcription upregulation via force-induced direct stretching of chromatin. Nature Materials, 15, 1287-1296.
Tamura, K. (2020) Nuclear pore complex-mediated gene expression in Arabidopsis thaliana. Journal of Plant Research, 133, 449-455.
Tamura, K., Goto, C. & Hara-Nishimura, I. (2015) Recent advances in understanding plant nuclear envelope proteins involved in nuclear morphology. Journal of Experimental Botany, 66, 1641-1647.
Tamura, K. & Hara-Nishimura, I. (2011) Involvement of the nuclear pore complex in morphology of the plant nucleus. Nucleus, 2, 168-172.
Tamura, K., Iwabuchi, K., Fukao, Y., Kondo, M., Okamoto, K., Ueda, H. et al. (2013) Myosin XI-i links the nuclear membrane to the cytoskeleton to control nuclear movement and shape in Arabidopsis. Current Biology, 23, 1776-1781.
Tang, Y., Dong, Q., Wang, T., Gong, L. & Gu, Y. (2022) PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity. Developmental Cell, 57, 19-31.e16.
Tang, Y., Ho, M.I., Kang, B.H. & Gu, Y. (2022) GBPL3 localizes to the nuclear pore complex and functionally connects the nuclear basket with the nucleoskeleton in plants. PLoS Biology, 20, e3001831.
Tan-Wong, S.M., Wijayatilake, H.D. & Proudfoot, N.J. (2009) Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex. Genes and Development, 23, 2610-2624.
Tatout, C., Evans, D.E., Vanrobays, E., Probst, A.V. & Graumann, K. (2014) The plant LINC complex at the nuclear envelope. Chromosome Research, 22, 241-252.
Touchstone, H., Bryd, R., Loisate, S., Thompson, M., Kim, S., Puranam, K. et al. (2019) Recovery of stem cell proliferation by low intensity vibration under simulated microgravity requires LINC complex. Nature Portfolio Journal Microgravity, 5, 11.
Trinh, D.C., Alonso-Serra, J., Asaoka, M., Colin, L., Cortes, M., Malivert, A. et al. (2021) How mechanical forces shape plant organs. Current Biology, 31, R143-R159.
Tsata, V. & Beis, D. (2020) In full force. Mechanotransduction and morphogenesis during homeostasis and tissue regeneration. Journal of Cardiovascular Development and Disease, 7, 40.
Uhler, C. & Shivashankar, G.V. (2017) Regulation of genome organization and gene expression by nuclear mechanotransduction. Nature Reviews Molecular Cell Biology, 18, 717-727.
Ulbert, S., Platani, M., Boue, S. & Mattaj, I.W. (2006) Direct membrane protein-DNA interactions required early in nuclear envelope assembly. The Journal of Cell Biology, 173, 469-476.
Vahabikashi, A., Adam, S.A., Medalia, O. & Goldman, R.D. (2022) Nuclear lamins: structure and function in mechanobiology. APL Bioengineering, 6, 011503.
van Bodegraven, E.J. & Etienne-Manneville, S. (2021) Intermediate filaments from Tissue integrity to single molecule mechanics. Cell, 10, 1905.
Walde, S. & Kehlenbach, R.H. (2010) The part and the whole: functions of nucleoporins in nucleocytoplasmic transport. Trends in Cell Biology, 20, 461-469.
Wang, H., Dittmer, T.A. & Richards, E.J. (2013) Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization. BMC Plant Biology, 13, 200.
Wu, Q., Li, Y., Lyu, M., Luo, Y., Shi, H. & Zhong, S. (2020) Touch-induced seedling morphological changes are determined by ethylene-regulated pectin degradation. Science Advances, 6, eabc9294.
Wu, X., Han, J. & Guo, C. (2022) Function of nuclear pore complexes in regulation of plant defense signaling. International Journal of Molecular Sciences, 23, 1-17.
Xu, C.R., Liu, C., Wang, Y.L., Li, L.C., Chen, W.Q., Xu, Z.H. et al. (2005) Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis. Proceedings of the National Academy of Sciences of the United States of America, 102, 14469-14474.
Ye, R., Wang, M., Du, H., Chhajed, S., Koh, J., Liu, K.H. et al. (2022) Glucose-driven TOR-FIE-PRC2 signalling controls plant development. Nature, 609, 986-993.
Zhou, X., Graumann, K., Evans, D.E. & Meier, I. (2012) Novel plant SUN-KASH bridges are involved in RanGAP anchoring and nuclear shape determination. The Journal of Cell Biology, 196, 203-211.
Zhou, X., Graumann, K. & Meier, I. (2015) The plant nuclear envelope as a multifunctional platform LINCed by SUN and KASH. Journal of Experimental Botany, 66, 1649-1659.
Zhou, X., Graumann, K., Wirthmueller, L., Jones, J.D. & Meier, I. (2014) Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. The Journal of Cell Biology, 205, 677-692.
Zhou, X. & Meier, I. (2014) Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proceedings of the National Academy of Sciences of the United States of America, 111, 11900-11905.
Zhu, X., Qi, C., Wang, R., Lee, J.-H., Shao, J., Bei, L. et al. (2022) Acute depletion of human core nucleoporin reveals direct roles in transcription control but dispensability for 3D genome organization. Cell Reports, 41, 111576.
Zimmerli, C.E., Allegretti, M., Rantos, V., Goetz, S.K., Obarska-Kosinska, A., Zagoriy, I. et al. (2021) Nuclear pores dilate and constrict in cellulo. Science, 374, eabd9776.