Density separation of petrous bone powders for optimized ancient DNA yields.


Journal

Genome research
ISSN: 1549-5469
Titre abrégé: Genome Res
Pays: United States
ID NLM: 9518021

Informations de publication

Date de publication:
04 2023
Historique:
received: 18 01 2023
accepted: 11 04 2023
medline: 17 5 2023
pubmed: 19 4 2023
entrez: 18 4 2023
Statut: ppublish

Résumé

Density separation is a process routinely used to segregate minerals, organic matter, and even microplastics, from soils and sediments. Here we apply density separation to archaeological bone powders before DNA extraction to increase endogenous DNA recovery relative to a standard control extraction of the same powders. Using nontoxic heavy liquid solutions, we separated powders from the petrous bones of 10 individuals of similar archaeological preservation into eight density intervals (2.15 to 2.45 g/cm

Identifiants

pubmed: 37072186
pii: gr.277714.123
doi: 10.1101/gr.277714.123
pmc: PMC10234301
doi:

Substances chimiques

DNA, Ancient 0
Powders 0
Plastics 0
DNA 9007-49-2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

622-631

Informations de copyright

© 2023 Fernandes et al.; Published by Cold Spring Harbor Laboratory Press.

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Auteurs

Daniel M Fernandes (DM)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria; ron.pinhasi@univie.ac.at daniel.fernandes@univie.ac.at.
CIAS, Department of Life Sciences, University of Coimbra, 3000-456 Coimbra, Portugal.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.

Kendra A Sirak (KA)

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Department of Human Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

Olivia Cheronet (O)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.

Mario Novak (M)

Centre for Applied Bioanthropology, Institute for Anthropological Research, 10000 Zagreb, Croatia.

Florian Brück (F)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Evelyn Zelger (E)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Alejandro Llanos-Lizcano (A)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Anna Wagner (A)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Anna Zettl (A)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Kirsten Mandl (K)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Kellie Sara Duffet Carlson (KS)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.

Victoria Oberreiter (V)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.

Kadir T Özdoğan (KT)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.
Department of History and Art History, Utrecht University, 3512 BS Utrecht, The Netherlands.

Susanna Sawyer (S)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.

Francesco La Pastina (F)

Department of Archaeology, University of Cambridge, Cambridge CB2 3DZ, United Kingdom.

Emanuela Borgia (E)

Dipartimento di Scienze dell'Antichità, Sapienza Università di Roma, Rome 00185, Italy.

Alfredo Coppa (A)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.
Dipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome 00185, Italy.

Miroslav Dobeš (M)

Institute of Archaeology of the Czech Academy of Sciences, Prague 118 00, Czech Republic.

Petr Velemínský (P)

Department of Anthropology, National Museum, Prague 115 79, Czech Republic.

David Reich (D)

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Department of Human Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

Lynne S Bell (LS)

Centre for Forensic Research, School of Criminology, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

Ron Pinhasi (R)

Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria; ron.pinhasi@univie.ac.at daniel.fernandes@univie.ac.at.
Human Evolution and Archaeological Sciences Forschungsverbund, University of Vienna, 1030 Vienna, Austria.

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