A novel human cellular model of CDA IV enables comprehensive analysis revealing the molecular basis of the disease phenotype.
Journal
Blood
ISSN: 1528-0020
Titre abrégé: Blood
Pays: United States
ID NLM: 7603509
Informations de publication
Date de publication:
22 Jun 2023
22 Jun 2023
Historique:
accepted:
17
02
2023
received:
13
10
2022
pmc-release:
22
06
2024
medline:
26
6
2023
pubmed:
21
4
2023
entrez:
21
04
2023
Statut:
ppublish
Résumé
Red blood cell disorders can result in severe anemia. One such disease congenital dyserythropoietic anemia IV (CDA IV) is caused by the heterozygous mutation E325K in the transcription factor KLF1. However, studying the molecular basis of CDA IV is severely impeded by the paucity of suitable and adequate quantities of material from patients with anemia and the rarity of the disease. We, therefore, took a novel approach, creating a human cellular disease model system for CDA IV that accurately recapitulates the disease phenotype. Next, using comparative proteomics, we reveal extensive distortion of the proteome and a wide range of disordered biological processes in CDA IV erythroid cells. These include downregulated pathways the governing cell cycle, chromatin separation, DNA repair, cytokinesis, membrane trafficking, and global transcription, and upregulated networks governing mitochondrial biogenesis. The diversity of such pathways elucidates the spectrum of phenotypic abnormalities that occur with CDA IV and impairment to erythroid cell development and survival, collectively explaining the CDA IV disease phenotype. The data also reveal far more extensive involvement of KLF1 in previously assigned biological processes, along with novel roles in the regulation of intracellular processes not previously attributed to this transcription factor. Overall, the data demonstrate the power of such a model cellular system to unravel the molecular basis of disease and how studying the effects of a rare mutation can reveal fundamental biology.
Identifiants
pubmed: 37084386
pii: 495423
doi: 10.1182/blood.2022018735
pmc: PMC10315626
doi:
Substances chimiques
Transcription Factors
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
3039-3054Subventions
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : R01 DK046865
Pays : United States
Informations de copyright
© 2023 by The American Society of Hematology.
Références
Commun Integr Biol. 2013 Nov 1;6(6):e27635
pubmed: 24563720
Mol Cell Biol. 1993 Apr;13(4):2298-308
pubmed: 8455611
Cell Rep. 2016 Aug 2;16(5):1470-1484
pubmed: 27452463
Nucleic Acids Res. 2018 Jan 4;46(D1):D649-D655
pubmed: 29145629
Mol Cell Biol. 2005 Jun;25(12):5205-14
pubmed: 15923635
Blood. 1994 Feb 1;83(3):860-8
pubmed: 7507739
J Physiol. 2012 Jul 15;590(14):3349-60
pubmed: 22586215
Blood. 2008 Sep 1;112(5):2081-8
pubmed: 18487511
EMBO J. 2005 Oct 5;24(19):3389-99
pubmed: 16148947
Genes Dev. 2004 Oct 15;18(20):2485-90
pubmed: 15489291
Blood. 2011 Sep 15;118(11):3137-45
pubmed: 21778342
IUBMB Life. 2010 Dec;62(12):886-90
pubmed: 21190291
Front Cell Dev Biol. 2016 Apr 12;4:24
pubmed: 27148529
Br J Haematol. 2008 May;141(3):398-406
pubmed: 18318763
Blood. 2015 Apr 9;125(15):2405-17
pubmed: 25724378
Blood Adv. 2020 Apr 14;4(7):1464-1477
pubmed: 32282884
Mol Biol Cell. 2005 Jul;16(7):3187-99
pubmed: 15843429
Blood. 2016 Apr 14;127(15):1856-62
pubmed: 26903544
Blood. 2011 Aug 25;118(8):2044-54
pubmed: 21613252
Trends Cell Biol. 2005 Sep;15(9):467-76
pubmed: 16084724
Nucleic Acids Res. 2019 Jul 2;47(W1):W199-W205
pubmed: 31114916
RNA Biol. 2016;13(3):265-71
pubmed: 26853452
Hum Gene Ther Methods. 2018 Feb;29(1):60-74
pubmed: 29325430
Mol Cell. 2020 Jun 4;78(5):960-974.e11
pubmed: 32330456
Transcription. 2019 Apr;10(2):57-75
pubmed: 30227759
Bioinformatics. 2018 Apr 1;34(7):1208-1214
pubmed: 29186351
Nat Commun. 2021 Jul 21;12(1):4439
pubmed: 34290235
Nat Genet. 2020 Dec;52(12):1333-1345
pubmed: 33230299
Genet Res (Camb). 2019 Dec 27;101:e14
pubmed: 31878985
EMBO Mol Med. 2018 Jun;10(6):
pubmed: 29700043
Exp Hematol. 2019 May;73:25-37.e8
pubmed: 30876823
Cell. 2018 Apr 5;173(2):430-442.e17
pubmed: 29606353
Hum Mutat. 2013 Jan;34(1):221-8
pubmed: 23125034
Blood. 1993 Mar 15;81(6):1636-40
pubmed: 7680924
J Pediatr Hematol Oncol. 2018 Aug;40(6):e389-e391
pubmed: 29200155
Mol Ther Methods Clin Dev. 2021 Jun 12;22:26-39
pubmed: 34485592
Mol Cell Biol. 2009 Mar;29(6):1526-37
pubmed: 19114560
Nature. 1995 May 25;375(6529):316-8
pubmed: 7753194
Nat Commun. 2017 Mar 14;8:14750
pubmed: 28290447
Haematologica. 2020 Aug;105(8):e389-e394
pubmed: 31753923
Am J Hum Genet. 2010 Nov 12;87(5):721-7
pubmed: 21055716
Science. 2011 Sep 30;333(6051):1895-8
pubmed: 21960636
Sci Rep. 2022 Jan 10;12(1):336
pubmed: 35013432
Curr Opin Hematol. 2012 Nov;19(6):486-93
pubmed: 22954727
J Clin Invest. 2010 Nov;120(11):3834-42
pubmed: 20921626
Blood Adv. 2022 Dec 13;6(23):6016-6022
pubmed: 35667093
Br J Haematol. 1991 Oct;79(2):322-30
pubmed: 1659863
Haematologica. 2011 May;96(5):635-8
pubmed: 21531944
Int J Lab Hematol. 2015 May;37 Suppl 1:78-84
pubmed: 25976964
Blood Adv. 2022 Jun 14;6(11):3280-3285
pubmed: 35240686
Blood Cells Mol Dis. 2013 Aug;51(2):71-5
pubmed: 23522491
Clin Case Rep. 2017 Jan 28;5(3):248-252
pubmed: 28265383
Mutagenesis. 2011 Jan;26(1):125-32
pubmed: 21164193
Leukemia. 2010 Apr;24(4):679-86
pubmed: 20130602
Nat Cell Biol. 2017 Jun;19(6):626-638
pubmed: 28504707
Curr Opin Hematol. 2017 May;24(3):183-190
pubmed: 28157724
Blood. 2013 Jun 6;121(23):4791-9
pubmed: 23570799
J Pediatr Hematol Oncol. 2018 Aug;40(6):e405-e409
pubmed: 29300242
IUBMB Life. 2008 Dec;60(12):824-33
pubmed: 18767169
Haematologica. 2019 Dec;104(12):2372-2380
pubmed: 30872368
BMC Genomics. 2019 May 24;20(1):417
pubmed: 31126231
PLoS Comput Biol. 2018 Jan 29;14(1):e1005968
pubmed: 29377902
J Clin Invest. 1994 Sep;94(3):1050-8
pubmed: 7521883
Science. 2021 Apr 9;372(6538):201-205
pubmed: 33833125
Nature. 1995 May 25;375(6529):318-22
pubmed: 7753195
Mutat Res Rev Mutat Res. 2020 Oct - Dec;786:108336
pubmed: 33339573
Nucleic Acids Res. 2011 Aug;39(14):5935-44
pubmed: 21459848
Nat Genet. 2010 Sep;42(9):801-5
pubmed: 20676099