A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont.
Asian hornet
Bumble bee
Butterfly
Commensalibacter
Functional genomics
Insect symbiont
Phylogenomics
Western honey bee
Journal
Animal microbiome
ISSN: 2524-4671
Titre abrégé: Anim Microbiome
Pays: England
ID NLM: 101759457
Informations de publication
Date de publication:
29 Apr 2023
29 Apr 2023
Historique:
received:
03
02
2023
accepted:
21
04
2023
medline:
30
4
2023
pubmed:
30
4
2023
entrez:
29
4
2023
Statut:
epublish
Résumé
To understand mechanisms of adaptation and plasticity of pollinators and other insects a better understanding of diversity and function of their key symbionts is required. Commensalibacter is a genus of acetic acid bacterial symbionts in the gut of honey bees and other insect species, yet little information is available on the diversity and function of Commensalibacter bacteria. In the present study, whole-genome sequences of 12 Commensalibacter isolates from bumble bees, butterflies, Asian hornets and rowan berries were determined, and publicly available genome assemblies of 14 Commensalibacter strains were used in a phylogenomic and comparative genomic analysis. The phylogenomic analysis revealed that the 26 Commensalibacter isolates represented four species, i.e. Commensalibacter intestini and three novel species for which we propose the names Commensalibacter melissae sp. nov., Commensalibacter communis sp. nov. and Commensalibacter papalotli sp. nov. Comparative genomic analysis revealed that the four Commensalibacter species had similar genetic pathways for central metabolism characterized by a complete tricarboxylic acid cycle and pentose phosphate pathway, but their genomes differed in size, G + C content, amino acid metabolism and carbohydrate-utilizing enzymes. The reduced genome size, the large number of species-specific gene clusters, and the small number of gene clusters shared between C. melissae and other Commensalibacter species suggested a unique evolutionary process in C. melissae, the Western honey bee symbiont. The genus Commensalibacter is a widely distributed insect symbiont that consists of multiple species, each contributing in a species specific manner to the physiology of the holobiont host.
Sections du résumé
BACKGROUND
BACKGROUND
To understand mechanisms of adaptation and plasticity of pollinators and other insects a better understanding of diversity and function of their key symbionts is required. Commensalibacter is a genus of acetic acid bacterial symbionts in the gut of honey bees and other insect species, yet little information is available on the diversity and function of Commensalibacter bacteria. In the present study, whole-genome sequences of 12 Commensalibacter isolates from bumble bees, butterflies, Asian hornets and rowan berries were determined, and publicly available genome assemblies of 14 Commensalibacter strains were used in a phylogenomic and comparative genomic analysis.
RESULTS
RESULTS
The phylogenomic analysis revealed that the 26 Commensalibacter isolates represented four species, i.e. Commensalibacter intestini and three novel species for which we propose the names Commensalibacter melissae sp. nov., Commensalibacter communis sp. nov. and Commensalibacter papalotli sp. nov. Comparative genomic analysis revealed that the four Commensalibacter species had similar genetic pathways for central metabolism characterized by a complete tricarboxylic acid cycle and pentose phosphate pathway, but their genomes differed in size, G + C content, amino acid metabolism and carbohydrate-utilizing enzymes. The reduced genome size, the large number of species-specific gene clusters, and the small number of gene clusters shared between C. melissae and other Commensalibacter species suggested a unique evolutionary process in C. melissae, the Western honey bee symbiont.
CONCLUSION
CONCLUSIONS
The genus Commensalibacter is a widely distributed insect symbiont that consists of multiple species, each contributing in a species specific manner to the physiology of the holobiont host.
Identifiants
pubmed: 37120592
doi: 10.1186/s42523-023-00248-6
pii: 10.1186/s42523-023-00248-6
pmc: PMC10149009
doi:
Types de publication
Journal Article
Langues
eng
Pagination
25Subventions
Organisme : FNRS/FWO joint program "EOS - Excellence Of Science
ID : CLiPS, no.3094785
Organisme : FNRS/FWO joint program "EOS - Excellence Of Science
ID : CLiPS, no.3094785
Organisme : FNRS/FWO joint program "EOS - Excellence Of Science
ID : CLiPS, no.3094785
Organisme : FNRS/FWO joint program "EOS - Excellence Of Science
ID : CLiPS, no.3094785
Organisme : FNRS/FWO joint program "EOS - Excellence Of Science
ID : CLiPS, no.3094785
Informations de copyright
© 2023. The Author(s).
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