Rapid epidemic expansion of chikungunya virus-ECSA lineage in Paraguay.


Journal

medRxiv : the preprint server for health sciences
Titre abrégé: medRxiv
Pays: United States
ID NLM: 101767986

Informations de publication

Date de publication:
17 Apr 2023
Historique:
medline: 3 5 2023
pubmed: 3 5 2023
entrez: 3 5 2023
Statut: epublish

Résumé

The spread of vector-borne viruses, such as CHIKV, is a significant public health concern in the Americas, with over 120,000 cases and 51 deaths in 2023, of which 46 occurred in Paraguay. Using a suite of genomic, phylodynamic, and epidemiological techniques, we characterized the ongoing large CHIKV epidemic in Paraguay. Genomic and epidemiological characterization of the ongoing Chikungunya virus epidemic in Paraguay.

Identifiants

pubmed: 37131602
doi: 10.1101/2023.04.16.23288635
pmc: PMC10153315
pii:
doi:

Types de publication

Preprint

Langues

eng

Commentaires et corrections

Type : UpdateIn

Références

Nat Rev Microbiol. 2010 Jul;8(7):491-500
pubmed: 20551973
Nat Protoc. 2017 Jun;12(6):1261-1276
pubmed: 28538739
RNA Biol. 2017 Dec 2;14(12):1649-1654
pubmed: 28722509
Nat Commun. 2019 Jun 12;10(1):2569
pubmed: 31189880
PLoS Negl Trop Dis. 2015 May 07;9(5):e0003764
pubmed: 25951202
Emerg Infect Dis. 2021 May;27(5):1393-1404
pubmed: 33900172
Virology. 1990 Feb;174(2):479-93
pubmed: 2129562
PLoS Negl Trop Dis. 2021 Apr 16;15(4):e0009290
pubmed: 33861753

Auteurs

Marta Giovanetti (M)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.
Sciences and Technologies for Sustainable Development and One Health, University of Campus Bio-Medico,Rome, Italy.

Cynthia Vazquez (C)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Mauricio Lima (M)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.
Laboratorio Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Brazil.

Emerson Castro (E)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.
Laboratorio Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Brazil.

Analia Rojas (A)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Andrea Gomez de la Fuente (AG)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Carolina Aquino (C)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Cesar Cantero (C)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Fatima Fleitas (F)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Juan Torales (J)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Julio Barrios (J)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Maria Jose Ortega (MJ)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Maria Liz Gamarra (ML)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Shirley Villalba (S)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Tania Alfonzo (T)

Laboratorio Central de Salud Pública, Asunción, Paraguay.

Joilson Xavier (J)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.
Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Brazil.

Talita Adelino (T)

Laboratorio Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Brazil.

Hegger Fritsch (H)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.
Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Brazil.

Felipe C M Iani (FCM)

Laboratorio Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Brazil.

Glauco Carvalho Pereira (GC)

Laboratorio Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Brazil.

Carla de Oliveira (C)

Laboratório de Arbovírus e Vírus Hemorrágicos (LARBOH), Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Brazil.

Gabriel Schuab (G)

Laboratório de Arbovírus e Vírus Hemorrágicos (LARBOH), Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Brazil.

Evandra Strazza Rodrigues (ES)

University of São Paulo, Ribeirão Preto Medical School, Blood Center of Ribeirão Preto, Ribeirão Preto, SP, Brazil.

Simone Kashima (S)

University of São Paulo, Ribeirão Preto Medical School, Blood Center of Ribeirão Preto, Ribeirão Preto, SP, Brazil.

Juliana Leite (J)

Infectious Hazards Management, Health Emergencies Department (PHE), Pan American Health Organization / World Health Organization (PAHO/WHO), Washington DC, USA.

Lionel Gresh (L)

Infectious Hazards Management, Health Emergencies Department (PHE), Pan American Health Organization / World Health Organization (PAHO/WHO), Washington DC, USA.

Leticia Franco (L)

Infectious Hazards Management, Health Emergencies Department (PHE), Pan American Health Organization / World Health Organization (PAHO/WHO), Washington DC, USA.

Houriiyah Tegally (H)

Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.
KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.

Wesley C Van Voorhis (WC)

Center for Emerging and Re-emerging Infectious Diseases, University of Washington, USA.

Richard Lessels (R)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.

Ana Maria Bispo de Filippis (AMB)

Laboratório de Arbovírus e Vírus Hemorrágicos (LARBOH), Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Brazil.

Andrea Ojeda (A)

Dirección General de Vigilancia de la Salud, Asunción, Paraguay.

Guillermo Sequera (G)

Dirección General de Vigilancia de la Salud, Asunción, Paraguay.

Romeo Montoya (R)

Enfermedades Trasmisibles y Determinantes Ambientales de la Salud CDE/HA/PHE, Organización Panamericana de la Salud / Organización Mundial de la Salud (OPS/OMS), Asuncion, Paraguay.

Edward C Holmes (EC)

Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, NSW, Australia.

Tulio de Oliveira (T)

Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.
KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.

Jairo Mendez Rico (JM)

Infectious Hazards Management, Health Emergencies Department (PHE), Pan American Health Organization / World Health Organization (PAHO/WHO), Washington DC, USA.

José Lourenço (J)

Biosystems and Integrative Sciences Institute, Faculty of Sciences, University of Lisbon, Lisbon, 1749-016, Portugal.

Vagner Fonseca (V)

Coordenação de Vigilância, Preparação e Resposta à Emergências e Desastres (PHE), Organização Pan-Americana da Saúde / Organização Mundial da Saúde (OPAS/OMS), Brasilia DF, Brazil.

Luiz Carlos Junior Alcantara (LCJ)

Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.

Classifications MeSH