OWSum: algorithmic odor prediction and insight into structure-odor relationships.

Odor prediction Olfaction Structure-odor relationships

Journal

Journal of cheminformatics
ISSN: 1758-2946
Titre abrégé: J Cheminform
Pays: England
ID NLM: 101516718

Informations de publication

Date de publication:
07 May 2023
Historique:
received: 12 08 2022
accepted: 16 04 2023
medline: 8 5 2023
pubmed: 8 5 2023
entrez: 7 5 2023
Statut: epublish

Résumé

We derived and implemented a linear classification algorithm for the prediction of a molecule's odor, called Olfactory Weighted Sum (OWSum). Our approach relies solely on structural patterns of the molecules as features for algorithmic treatment and uses conditional probabilities combined with tf-idf values. In addition to the prediction of molecular odor, OWSum provides insights into properties of the dataset and allows to understand how algorithmic classifications are reached by quantitatively assigning structural patterns to odors. This provides chemists with an intuitive understanding of underlying interactions. To deal with ambiguities of the natural language used to describe odor, we introduced descriptor overlap as a metric for the quantification of semantic overlap between descriptors. Thus, grouping of descriptors and derivation of higher-level descriptors becomes possible. Our approach poses a large leap forward in our capabilities to understand and predict molecular features.

Identifiants

pubmed: 37150811
doi: 10.1186/s13321-023-00722-y
pii: 10.1186/s13321-023-00722-y
pmc: PMC10164323
doi:

Types de publication

Journal Article

Langues

eng

Pagination

51

Informations de copyright

© 2023. The Author(s).

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Auteurs

Doris Schicker (D)

Sensory Analytics and Technologies, Fraunhofer Institute for Process Engineering and Packaging IVV, Giggenhauser Straße 35, 85354, Freising, Germany. doris.schicker@ivv.fraunhofer.de.
Department of Psychiatry and Psychotherapy, Friedrich-Alexander-Universität Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany. doris.schicker@ivv.fraunhofer.de.

Satnam Singh (S)

Sensory Analytics and Technologies, Fraunhofer Institute for Process Engineering and Packaging IVV, Giggenhauser Straße 35, 85354, Freising, Germany.
Department of Psychiatry and Psychotherapy, Friedrich-Alexander-Universität Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany.

Jessica Freiherr (J)

Sensory Analytics and Technologies, Fraunhofer Institute for Process Engineering and Packaging IVV, Giggenhauser Straße 35, 85354, Freising, Germany.
Department of Psychiatry and Psychotherapy, Friedrich-Alexander-Universität Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany.

Andreas T Grasskamp (AT)

Sensory Analytics and Technologies, Fraunhofer Institute for Process Engineering and Packaging IVV, Giggenhauser Straße 35, 85354, Freising, Germany. andreas.grasskamp@ivv.fraunhofer.de.

Classifications MeSH