Modified coptisine derivatives as an inhibitor against pathogenic

Black Fungus DFT Marburg virus Monkeypox QSAR admet molecular docking molecular dynamic simulation

Journal

Frontiers in pharmacology
ISSN: 1663-9812
Titre abrégé: Front Pharmacol
Pays: Switzerland
ID NLM: 101548923

Informations de publication

Date de publication:
2023
Historique:
received: 09 01 2023
accepted: 29 03 2023
medline: 8 5 2023
pubmed: 8 5 2023
entrez: 8 5 2023
Statut: epublish

Résumé

During the second phase of SARS-CoV-2, an unknown fungal infection, identified as black fungus, was transmitted to numerous people among the hospitalized COVID-19 patients and increased the death rate. The black fungus is associated with the Mycolicibacterium smegmatis, Mucor lusitanicus, and Rhizomucor miehei microorganisms. At the same time, other pathogenic diseases, such as the Monkeypox virus and Marburg virus, impacted global health. Policymakers are concerned about these pathogens due to their severe pathogenic capabilities and rapid spread. However, no standard therapies are available to manage and treat those conditions. Since the coptisine has significant antimicrobial, antiviral, and antifungal properties; therefore, the current investigation has been designed by modifying coptisine to identify an effective drug molecule against Black fungus, Monkeypox, and Marburg virus. After designing the derivatives of coptisine, they have been optimized to get a stable molecular structure. These ligands were then subjected to molecular docking study against two vital proteins obtained from black fungal pathogens: Rhizomucor miehei (PDB ID: 4WTP) and Mycolicibacterium smegmatis (PDB ID 7D6X), and proteins found in Monkeypox virus (PDB ID: 4QWO) and Marburg virus (PDB ID 4OR8). Following molecular docking, other computational investigations, such as ADMET, QSAR, drug-likeness, quantum calculation and molecular dynamics, were also performed to determine their potentiality as antifungal and antiviral inhibitors. The docking score reported that they have strong affinities against Black fungus, Monkeypox virus, and Marburg virus. Then, the molecular dynamic simulation was conducted to determine their stability and durability in the physiological system with water at 100 ns, which documented that the mentioned drugs were stable over the simulated time. Thus, our

Identifiants

pubmed: 37153804
doi: 10.3389/fphar.2023.1140494
pii: 1140494
pmc: PMC10154673
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1140494

Informations de copyright

Copyright © 2023 Akash, Hossain, Mukerjee, Sarker, Khan, Hossain, Rashid, Kumer, Ghosh, León-Figueroa, Barboza, Padhi and Sah.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The handling editor AR declared a past co-authorship with the author RS.

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Auteurs

Shopnil Akash (S)

Department of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, Bangladesh.

Arafat Hossain (A)

Department of Biochemistry and Molecular Biology, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj, Bangladesh.

Nobendu Mukerjee (N)

Department of Microbiology, West Bengal State University, Kolkata, West Bengal, India.
Department of Health Sciences, Novel Global Community Educational Foundation, Hebersham, NSW, Australia.

Md Moklesur Rahman Sarker (MMR)

Health Med. Science Research Network, Dhaka, Bangladesh.
Department of Pharmacy, State University of Bangladesh, Dhaka, Bangladesh.

Mohammad Firoz Khan (MF)

Department of Pharmacy, State University of Bangladesh, Dhaka, Bangladesh.

Md Jamal Hossain (MJ)

Department of Pharmacy, State University of Bangladesh, Dhaka, Bangladesh.

Mohammad A Rashid (MA)

Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Dhaka, Dhaka, Bangladesh.

Ajoy Kumer (A)

Laboratory of Computational Research for Drug Design and Material Science, Department of Chemistry, European University of Bangladesh, Dhaka, Bangladesh.

Arabinda Ghosh (A)

Microbiology Division, Department of Botany, Gauhati University, Guwahati, Assam, India.

Darwin A León-Figueroa (DA)

Facultad de Medicina Humana, Universidad de San Martín de Porres, Chiclayo, Peru.

Joshuan J Barboza (JJ)

Escuela de Medicina, Universidad Cesar Vallejo, Trujillo, Peru.

Bijaya Kumar Padhi (BK)

Department of Community Medicine, School of Public Health, Postgraduate Institute of Medical Education and Research, Chandigarh, India.

Ranjit Sah (R)

Institute of Medicine, Tribhuvan University Teaching Hospital, Kathmandu, Nepal.
Dr. D.Y Patil Medical College, Hospital and Research Centre, Pune, Maharashtra, India.
Green City Hospital, Tokha, Nepal.

Classifications MeSH