Lipid flipping in the omega-3 fatty-acid transporter.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
08 05 2023
08 05 2023
Historique:
received:
22
12
2022
accepted:
28
03
2023
medline:
10
5
2023
pubmed:
9
5
2023
entrez:
8
5
2023
Statut:
epublish
Résumé
Mfsd2a is the transporter for docosahexaenoic acid (DHA), an omega-3 fatty acid, across the blood brain barrier (BBB). Defects in Mfsd2a are linked to ailments from behavioral and motor dysfunctions to microcephaly. Mfsd2a transports long-chain unsaturated fatty-acids, including DHA and α-linolenic acid (ALA), that are attached to the zwitterionic lysophosphatidylcholine (LPC) headgroup. Even with the recently determined structures of Mfsd2a, the molecular details of how this transporter performs the energetically unfavorable task of translocating and flipping lysolipids across the lipid bilayer remains unclear. Here, we report five single-particle cryo-EM structures of Danio rerio Mfsd2a (drMfsd2a): in the inward-open conformation in the ligand-free state and displaying lipid-like densities modeled as ALA-LPC at four distinct positions. These Mfsd2a snapshots detail the flipping mechanism for lipid-LPC from outer to inner membrane leaflet and release for membrane integration on the cytoplasmic side. These results also map Mfsd2a mutants that disrupt lipid-LPC transport and are associated with disease.
Identifiants
pubmed: 37156797
doi: 10.1038/s41467-023-37702-7
pii: 10.1038/s41467-023-37702-7
pmc: PMC10167227
doi:
Substances chimiques
Fatty Acids, Omega-3
0
Symporters
0
Membrane Transport Proteins
0
Docosahexaenoic Acids
25167-62-8
Lysophosphatidylcholines
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, N.I.H., Extramural
Research Support, N.I.H., Intramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
2571Subventions
Organisme : Intramural NIH HHS
ID : ZIA HD008998
Pays : United States
Organisme : NIGMS NIH HHS
ID : P41 GM136508
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States
Informations de copyright
© 2023. The Author(s).
Références
Stillwell, W. & Wassall, S. R. Docosahexaenoic acid: membrane properties of a unique fatty acid. Chem. Phys. Lipids 126, 1–27 (2003).
pubmed: 14580707
doi: 10.1016/S0009-3084(03)00101-4
Sastry, P. S. Lipids of nervous tissue: composition and metabolism. Prog. Lipid Res. 24, 69–176 (1985).
pubmed: 3916238
doi: 10.1016/0163-7827(85)90011-6
Boucher, O. et al. Neurophysiologic and neurobehavioral evidence of beneficial effects of prenatal omega-3 fatty acid intake on memory function at school age. Am. J. Clin. Nutr. 93, 1025–1037 (2011).
pubmed: 21389181
pmcid: 3076654
doi: 10.3945/ajcn.110.000323
Stordy, B. J. Dark adaptation, motor skills, docosahexaenoic acid, and dyslexia. Am. J. Clin. Nutr. 71, 323–326 (2000).
doi: 10.1093/ajcn/71.1.323S
Lacombe, R. J. S., Chouinard-Watkins, R. & Bazinet, R. P. Brain docosahexaenoic acid uptake and metabolism. Mol. Aspects Med. 64, 109–134 (2018).
pubmed: 29305120
doi: 10.1016/j.mam.2017.12.004
Nguyen, L. N. et al. Mfsd2a is a transporter for the essential omega-3 fatty acid docosahexaenoic acid. Nature 509, 503–506 (2014).
pubmed: 24828044
doi: 10.1038/nature13241
Zihni, C., Mills, C., Matter, K. & Balda, M. S. Tight junctions: from simple barriers to multifunctional molecular gates. Nat. Publ. Gr. https://doi.org/10.1038/nrm.2016.80 (2016).
Lochhead, J. J., Yang, J., Ronaldson, P. T. & Davis, T. P. Structure, function, and regulation of the blood-brain barrier tight junction in central nervous system disorders. Front. Physiol. 11, 914 (2020).
pubmed: 32848858
pmcid: 7424030
doi: 10.3389/fphys.2020.00914
Greene, C. & Campbell, M. Tight junction modulation of the blood brain barrier: CNS delivery of small molecules. Tissue Barriers 4, 1–10 (2016).
doi: 10.1080/21688370.2015.1138017
Prescher, M. et al. Evidence for a credit-card-swipe mechanism in the human PC floppase ABCB4. Structure 29, 1144–1155.e5 (2021).
pubmed: 34107287
doi: 10.1016/j.str.2021.05.013
Nintemann, S. J., Palmgren, M. & López-Marqués, R. L. Catch you on the flip side: a critical review of flippase mutant phenotypes. Trends Plant Sci. 24, 468–478 (2019).
pubmed: 30885637
doi: 10.1016/j.tplants.2019.02.002
Andersen, J. P., Vestergaard, A. L., Mikkelsen, S. A. & Mogensen, L. S. P4-ATPases as phospholipid flippases—structure, function, and enigmas. Front. Physiol. 7, 1–23 (2016).
Hankins, H. M. et al. Role of flippases, scramblases, and transfer proteins in phosphatidylserine subcellular distribution. Traffic 16, 35–47 (2015).
Zhang, T. et al. TMEM41B and VMP1 are phospholipid scramblases. Autophagy 17, 2048–2050 (2021).
pubmed: 34074213
pmcid: 8386743
doi: 10.1080/15548627.2021.1937898
Saier, M. H. et al. The major facilitator superfamily. J. Mol. Microbiol. Biotechnol. 1, 257–279 (1999).
pubmed: 10943556
Quistgaard, E. M., Löw, C., Guettou, F. & Nordlund, P. Understanding transport by the major facilitator superfamily (MFS): Structures pave the way. Nat. Rev. Mol. Cell Biol. 17, 123–132 (2016).
pubmed: 26758938
doi: 10.1038/nrm.2015.25
Law, C. J., Maloney, P. C. & Wang, D. Ins and outs of major facilitator superfamily antiporters. Ann. Rev. MicroBiol. 62, 289–305 (2008).
Angers, M., Uldry, M., Kong, D., Gimble, J. M. & Jetten, A. M. Mfsd2a encodes a 14 novel major facilitator superfamily domain-containing protein highly induced in brown 15 adipose tissue during fasting and adaptive thermogenesis. Biochem. J. 23, 1–7 (2008).
Cater, R. J. et al. Structural basis of omega-3 fatty acid transport across the blood–brain barrier. Nature 595, 315–319 (2021).
pubmed: 34135507
pmcid: 8266758
doi: 10.1038/s41586-021-03650-9
Vu, T. M. et al. Mfsd2b is essential for the sphingosine-1-phosphate export in erythrocytes and platelets. Nature 550, 524–528 (2017).
pubmed: 29045386
doi: 10.1038/nature24053
Harvat, E. M. et al. Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily. J. Biol. Chem. 280, 12028–12034 (2005).
pubmed: 15661733
doi: 10.1074/jbc.M414368200
Mendoza, A. The transporter Spns2 is required for secretion of lymph but not plasma sphingosine-1-phosphate. Cell Rep. https://doi.org/10.1016/j.celrep.2012.09.021.The (2012).
Chan, J. P. et al. The lysolipid transporter Mfsd2a regulates lipogenesis in the developing brain. PLoS Biol. 16, 1–30 (2018).
doi: 10.1371/journal.pbio.2006443
Huang, B. & Li, X. The role of Mfsd2a in nervous system diseases. Front. Neurosci. 15, 1–9 (2021).
doi: 10.3389/fnins.2021.730534
Ben-Zvi, A. et al. Mfsd2a is critical for the formation and function of the blood-brain barrier. Nature 509, 507–511 (2014).
pubmed: 24828040
pmcid: 4134871
doi: 10.1038/nature13324
Guemez-Gamboa, A. et al. Inactivating mutations in MFSD2A, required for omega-3 fatty acid transport in brain, cause a lethal microcephaly syndrome. Nat. Genet. 47, 809–813 (2015).
pubmed: 26005868
pmcid: 4547531
doi: 10.1038/ng.3311
Harel, T. et al. Homozygous mutation in MFSD2A, encoding a lysolipid transporter for docosahexanoic acid, is associated with microcephaly and hypomyelination. Neurogenetics 19, 227–235 (2018).
pubmed: 30043326
doi: 10.1007/s10048-018-0556-6
Zhou, J. et al. Zika virus degrades the w -3 fatty acid transporter Mfsd2a in brain microvascular endothelial cells and impairs lipid homeostasis. Sci. Adv. 5, eaax7142 (2019).
pubmed: 31681849
pmcid: 6810275
doi: 10.1126/sciadv.aax7142
Wood, C. A. P. et al. Structure and mechanism of blood–brain-barrier lipid transporter MFSD2A. Nature 596, 444–448 (2021).
pubmed: 34349262
pmcid: 8884080
doi: 10.1038/s41586-021-03782-y
Martinez-Molledo, M., Nji, E. & Reyes, N. Structural insights into the lysophospholipid brain uptake mechanism and its inhibition by syncytin-2. Nat. Struct. Mol. Biol. 29, 604–612 (2022).
pubmed: 35710838
doi: 10.1038/s41594-022-00786-8
Nygaard, R., Kim, J. & Mancia, F. Cryo-electron microscopy analysis of small membrane proteins. Curr. Opin. Struct. Biol. 64, 26–33 (2020).
pubmed: 32603877
pmcid: 7665978
doi: 10.1016/j.sbi.2020.05.009
Kobayashi, N. et al. MFSD2B is a sphingosine 1-phosphate transporter in erythroid cells. Sci. Rep. 8, 1–11 (2018).
doi: 10.1038/s41598-018-23300-x
Quek, D. Q. Y., Nguyen, L. N., Fan, H. & Silver, D. L. Structural insights into the transport mechanism of the human sodium-dependent lysophosphatidylcholine transporter MFSD2A. J. Biol. Chem. 291, 9383–9394 (2016).
pubmed: 26945070
pmcid: 4850279
doi: 10.1074/jbc.M116.721035
Drew, D., North, R. A., Nagarathinam, K. & Tanabe, M. Structures and general transport mechanisms by the major facilitator superfamily (MFS). Chem. Rev. 121, 5289–5335 (2021).
pubmed: 33886296
pmcid: 8154325
doi: 10.1021/acs.chemrev.0c00983
Hiraizumi, M., Yamashita, K., Nishizawa, T. & Nureki, O. Cryo-EM structures capture the transport cycle of the P4-ATPase flippase. Science 365, 1149–1155 (2019).
pubmed: 31416931
doi: 10.1126/science.aay3353
Bai, L. et al. Transport mechanism of P4 ATPase phosphatidylcholine flippases. Elife 9, 1–20 (2020).
doi: 10.7554/eLife.62163
Mastronarde, D. N. Automated electron microscope tomography using robust prediction of specimen movements. J. Struct. Biol. 152, 36–51 (2005).
pubmed: 16182563
doi: 10.1016/j.jsb.2005.07.007
Zivanov, J. et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3. Elife 7, 1–22 (2018).
doi: 10.7554/eLife.42166
Zheng, S. Q. et al. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nat. Methods 14, 331–332 (2017).
pubmed: 28250466
pmcid: 5494038
doi: 10.1038/nmeth.4193
Zhang, K. Gctf: Real-time CTF determination and correction. J. Struct. Biol. 193, 1–12 (2016).
pubmed: 26592709
pmcid: 4711343
doi: 10.1016/j.jsb.2015.11.003
Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. CryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017).
pubmed: 28165473
doi: 10.1038/nmeth.4169
Grant, G., Rohou, A. & Grigorieff, N. cisTEM, user-friendly software for single- particle image processing. Cancer Res. 36, 1883–1885 (1976).
Punjani, A. & Fleet, D. J. 3D variability analysis: resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM. J. Struct. Biol. 213, 107702 (2021).
pubmed: 33582281
doi: 10.1016/j.jsb.2021.107702
Pettersen, E. F. et al. UCSF Chimera−a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004).
pubmed: 15264254
doi: 10.1002/jcc.20084
Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics research papers. Acta Crystallogr. Sect. D https://doi.org/10.1107/S0907444904019158 (2004).
Lei, H., Ma, J., Martinez, S. S. & Gonen, T. Crystal structure of arginine-bound lysosomal transporter SLC38A9 in the cytosol-open state. Nat. Struct. Mol. Biol. 25, 522–527 (2018).
pubmed: 29872228
pmcid: 7346717
doi: 10.1038/s41594-018-0072-2
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. Sect. D Biol. Crystallogr. 66, 213–221 (2010).
doi: 10.1107/S0907444909052925
Afonine, P. V. et al. Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Crystallogr. Sect. D Struct. Biol. 74, 531–544 (2018).
doi: 10.1107/S2059798318006551