Reference genome for the American rubyspot damselfly, Hetaerina americana.

Aquatic insect California Conservation Genomics Project Calopterygidae Odonata Zygoptera

Journal

The Journal of heredity
ISSN: 1465-7333
Titre abrégé: J Hered
Pays: United States
ID NLM: 0375373

Informations de publication

Date de publication:
22 Jun 2023
Historique:
received: 05 10 2022
accepted: 07 05 2023
medline: 26 6 2023
pubmed: 17 5 2023
entrez: 17 5 2023
Statut: ppublish

Résumé

Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensitive to habitat loss and fragmentation. As such, landscape genomic studies of these taxa can help focus conservation efforts on watersheds with high levels of genetic diversity, local adaptation, and even cryptic endemism. Here, as part of the California Conservation Genomics Project (CCGP), we report the first reference genome for the American rubyspot damselfly, Hetaerina americana, a species associated with springs, streams and rivers throughout California. Following the CCGP assembly pipeline, we produced two de novo genome assemblies. The primary assembly includes 1,630,044,487 base pairs, with a contig N50 of 5.4 Mb, a scaffold N50 of 86.2 Mb, and a BUSCO completeness score of 97.6%. This is the seventh Odonata genome to be made publicly available and the first for the subfamily Hetaerininae. This reference genome fills an important phylogenetic gap in our understanding of Odonata genome evolution, and provides a genomic resource for a host of interesting ecological, evolutionary, and conservation questions for which the rubyspot damselfly genus Hetaerina is an important model system.

Identifiants

pubmed: 37195415
pii: 7169151
doi: 10.1093/jhered/esad031
pmc: PMC10287145
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

385-394

Subventions

Organisme : NIH HHS
ID : S10 OD010786
Pays : United States
Organisme : NIH HHS
ID : S10 OD018174
Pays : United States

Informations de copyright

© The American Genetic Association. 2023.

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Auteurs

Gregory F Grether (GF)

Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

Joscha Beninde (J)

La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

Eric Beraut (E)

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, United States.

Noravit Chumchim (N)

DNA Technologies and Expression Analysis Core Laboratory, University of California Davis, Davis, CA 95616, United States.

Merly Escalona (M)

Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, United States.

Zachary G MacDonald (ZG)

La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

Courtney Miller (C)

Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

Ruta Sahasrabudhe (R)

DNA Technologies and Expression Analysis Core Laboratory, University of California Davis, Davis, CA 95616, United States.

Andrew M Shedlock (AM)

Department of Biology, College of Charleston, Charleston, SC 29424, United States.

Erin Toffelmier (E)

Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

H Bradley Shaffer (HB)

Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.
La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.

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