Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche.

Exophiala biological soil crusts black yeast fungi fungi melanin microbial ecology polyextremotolerant fungi

Journal

G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598

Informations de publication

Date de publication:
09 08 2023
Historique:
received: 22 02 2023
accepted: 30 04 2023
medline: 10 8 2023
pubmed: 24 5 2023
entrez: 23 5 2023
Statut: ppublish

Résumé

Black yeasts are polyextremotolerant fungi that contain high amounts of melanin in their cell wall and maintain a primar yeast form. These fungi grow in xeric, nutrient depletes environments which implies that they require highly flexible metabolisms and have been suggested to contain the ability to form lichen-like mutualisms with nearby algae and bacteria. However, the exact ecological niche and interactions between these fungi and their surrounding community are not well understood. We have isolated 2 novel black yeasts from the genus Exophiala that were recovered from dryland biological soil crusts. Despite notable differences in colony and cellular morphology, both fungi appear to be members of the same species, which has been named Exophiala viscosa (i.e. E. viscosa JF 03-3 Goopy and E. viscosa JF 03-4F Slimy). A combination of whole genome sequencing, phenotypic experiments, and melanin regulation experiments have been performed on these isolates to fully characterize these fungi and help decipher their fundamental niche within the biological soil crust consortium. Our results reveal that E. viscosa is capable of utilizing a wide variety of carbon and nitrogen sources potentially derived from symbiotic microbes, can withstand many forms of abiotic stresses, and excretes melanin which can potentially provide ultraviolet resistance to the biological soil crust community. Besides the identification of a novel species within the genus Exophiala, our study also provides new insight into the regulation of melanin production in polyextremotolerant fungi.

Identifiants

pubmed: 37221014
pii: 7176444
doi: 10.1093/g3journal/jkad110
pmc: PMC10411609
pii:
doi:

Substances chimiques

Melanins 0
Soil 0

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America.

Déclaration de conflit d'intérêts

Conflicts of interest The authors declare no conflict of interest.

Références

Annu Rev Phys Chem. 2015 Apr;66:497-519
pubmed: 25664840
Mycoses. 2017 Jun;60(6):358-365
pubmed: 28111800
PLoS One. 2007 May 23;2(5):e457
pubmed: 17520016
Genome Biol. 2004;5(2):R7
pubmed: 14759257
Int J Mol Sci. 2019 Aug 13;20(16):
pubmed: 31412656
Med Mycol. 2014 Jan;52(1):10-8
pubmed: 23998343
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Mol Biol Evol. 2000 Apr;17(4):540-52
pubmed: 10742046
Proc Natl Acad Sci U S A. 1941 Nov 15;27(11):499-506
pubmed: 16588492
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41
pubmed: 14681378
ISME J. 2015 Feb;9(2):412-24
pubmed: 25072413
Genome Announc. 2017 Nov 2;5(44):
pubmed: 29097475
Can J Biochem Physiol. 1959 Aug;37(8):911-7
pubmed: 13671378
J Am Chem Soc. 2021 Feb 24;143(7):2622-2637
pubmed: 33560127
Fungal Biol. 2011 Oct;115(10):1030-7
pubmed: 21944215
PLoS One. 2009;4(2):e4437
pubmed: 19212443
Prikl Biokhim Mikrobiol. 2014 Mar-Apr;50(2):125-34
pubmed: 25272728
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66
pubmed: 12136088
Microbiome. 2019 Apr 3;7(1):55
pubmed: 30944036
G3 (Bethesda). 2014 Apr 16;4(4):561-78
pubmed: 24496724
Acta Biochim Pol. 2006;53(3):429-43
pubmed: 16951740
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
Microb Ecol. 2002 Jan;43(1):13-25
pubmed: 11984625
Fungal Biol. 2011 Oct;115(10):1008-18
pubmed: 21944213
J Clin Microbiol. 2003 Oct;41(10):4767-78
pubmed: 14532218
Bioinformatics. 2005 Jun;21 Suppl 1:i351-8
pubmed: 15961478
FEMS Microbiol Ecol. 2010 Jan;71(1):2-11
pubmed: 19878320
ISME J. 2021 Dec;15(12):3437-3454
pubmed: 34099878
Nucleic Acids Res. 2019 Jan 8;47(D1):D259-D264
pubmed: 30371820
Nat Genet. 2000 May;25(1):25-9
pubmed: 10802651
Science. 2014 Jul 4;345(6192):94-8
pubmed: 24994654
Oecologia. 2004 Jul;140(2):211-6
pubmed: 15138881
Bioinformatics. 2001 Aug;17(8):754-5
pubmed: 11524383
Nucleic Acids Res. 2000 Jan 1;28(1):304-5
pubmed: 10592255
Nature. 1967 May 27;214(5091):879-82
pubmed: 6054967
Clin Microbiol Infect. 2012 Feb;18(2):E27-30
pubmed: 22181050
Curr Biol. 2019 Oct 21;29(20):3439-3456.e5
pubmed: 31607535
Genome Res. 2000 Apr;10(4):516-22
pubmed: 10779491
Environ Microbiol. 2007 Jul;9(7):1613-31
pubmed: 17564597
Int J Syst Evol Microbiol. 2006 Nov;56(Pt 11):2697-2702
pubmed: 17082414
Nature. 2001 Jun 21;411(6840):937-40
pubmed: 11418855
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D154-9
pubmed: 15608167
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296
pubmed: 33885785
Genome Res. 2008 May;18(5):821-9
pubmed: 18349386
Appl Environ Microbiol. 2007 Jan;73(2):615-21
pubmed: 17098915
Genome Res. 2000 Apr;10(4):547-8
pubmed: 10779496
Biol Rev Camb Philos Soc. 2020 Apr;95(2):409-433
pubmed: 31763752
Curr Protoc Bioinformatics. 2013 Jun;Chapter 3:3.1.1-3.1.8
pubmed: 23749753
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
J Fungi (Basel). 2021 Dec 15;7(12):
pubmed: 34947060
Geobiology. 2020 Jan;18(1):3-13
pubmed: 31729136
Trends Genet. 2000 Sep;16(9):418-20
pubmed: 10973072
Stud Mycol. 2017 Mar;86:1-28
pubmed: 28348446
Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704
pubmed: 24297253
PeerJ. 2018 Jun 4;6:e4958
pubmed: 29888139
Fungal Biol Rev. 2017 Mar;31(2):99-112
pubmed: 31649746
PLoS One. 2016 Feb 11;11(2):e0148166
pubmed: 26867131
Fungal Genet Biol. 2011 May;48(5):544-53
pubmed: 21277986
Genome Res. 2008 Dec;18(12):1979-90
pubmed: 18757608
Nucleic Acids Res. 1999 Jan 1;27(1):29-34
pubmed: 9847135
Bioinformatics. 2003 Aug 12;19(12):1572-4
pubmed: 12912839
Biochim Biophys Acta. 2005 Feb 25;1707(1):1-23
pubmed: 15721603
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8
pubmed: 21187386
J Mol Biol. 2001 Jan 19;305(3):567-80
pubmed: 11152613
Bioinformatics. 2001 Sep;17(9):847-8
pubmed: 11590104
J Immunol Methods. 2000 Oct 20;244(1-2):69-80
pubmed: 11033020
Protein Eng. 1999 Jan;12(1):3-9
pubmed: 10065704
Front Microbiol. 2015 Apr 14;6:277
pubmed: 25926821
World J Microbiol Biotechnol. 2012 Feb;28(2):505-12
pubmed: 22806845
Mycopathologia. 2013 Jun;175(5-6):523-35
pubmed: 23161018
Environ Microbiol. 2020 Apr;22(4):1310-1326
pubmed: 32011087
BMC Microbiol. 2006 Jun 19;6:55
pubmed: 16784529
J Invest Dermatol. 1993 Nov;101(5):685-9
pubmed: 8228329
Arch Microbiol. 1984 Apr;137(4):324-8
pubmed: 6539583
Int Microbiol. 2020 Jan;23(1):55-63
pubmed: 31020477
AMB Express. 2014 Nov 04;4:80
pubmed: 25401079
J Gen Microbiol. 1966 Aug;44(2):149-56
pubmed: 5969497
J Clin Microbiol. 1980 Sep;12(3):332-5
pubmed: 7012169
Mol Ecol Resour. 2021 Feb;21(2):609-620
pubmed: 33058550
J Clin Microbiol. 1977 Aug;6(2):111-6
pubmed: 330558
Stem Cell Investig. 2015 Oct 30;2:19
pubmed: 27358887
iScience. 2020 Apr 24;23(4):100980
pubmed: 32240950
Genetics. 2012 Mar;190(3):885-929
pubmed: 22419079
Oecologia. 1981 Jan;51(3):426-429
pubmed: 28310031
Mol Ecol. 2013 Nov;22(21):5271-7
pubmed: 24112409
Curr Protoc Mol Biol. 2008 Apr;Chapter 13:Unit 13.3B
pubmed: 18425760
Clin Microbiol Rev. 2002 Apr;15(2):167-93
pubmed: 11932229
ISME J. 2013 Nov;7(11):2178-91
pubmed: 23739051
Front Microbiol. 2012 Nov 08;3:390
pubmed: 23162543
Nucleic Acids Res. 2012 Jan;40(Database issue):D26-32
pubmed: 22110030
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Mol Biol Evol. 2009 Jul;26(7):1641-50
pubmed: 19377059
Nature. 2006 Oct 19;443(7113):818-22
pubmed: 17051209
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712

Auteurs

Erin C Carr (EC)

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

Quin Barton (Q)

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

Sarah Grambo (S)

Roy J. Carver Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.

Mitchell Sullivan (M)

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

Cecile M Renfro (CM)

Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

Alan Kuo (A)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Jasmyn Pangilinan (J)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Anna Lipzen (A)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Keykhosrow Keymanesh (K)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Emily Savage (E)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Kerrie Barry (K)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Igor V Grigoriev (IV)

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.

Wayne R Riekhof (WR)

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

Steven D Harris (SD)

Department of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, IA 50011, USA.

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