Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR.


Journal

Journal of the American Chemical Society
ISSN: 1520-5126
Titre abrégé: J Am Chem Soc
Pays: United States
ID NLM: 7503056

Informations de publication

Date de publication:
07 Jun 2023
Historique:
medline: 25 5 2023
pubmed: 25 5 2023
entrez: 25 5 2023
Statut: ppublish

Résumé

While nuclear magnetic resonance (NMR) is regarded as a reference in fragment-based drug design, its implementation in a high-throughput manner is limited by its lack of sensitivity resulting in long acquisition times and high micromolar sample concentrations. Several hyperpolarization approaches could, in principle, improve the sensitivity of NMR also in drug research. However, photochemically induced dynamic nuclear polarization (photo-CIDNP) is the only method that is directly applicable in aqueous solution and agile for scalable implementation using off-the-shelf hardware. With the use of photo-CIDNP, this work demonstrates the detection of weak binders in the millimolar affinity range using low micromolar concentrations down to 5 μM of ligand and 2 μM of target, thereby exploiting the photo-CIDNP-induced polarization twice: (i) increasing the signal-to-noise by one to two orders in magnitude and (ii) polarization-only of the free non-bound molecule allowing identification of binding by polarization quenching, yielding another factor of hundred in time when compared with standard techniques. The interaction detection was performed with single-scan NMR experiments of a duration of 2 to 5 s. Taking advantage of the readiness of photo-CIDNP setup implementation, an automated flow-through platform was designed to screen samples at a screening rate of 1500 samples per day. Furthermore, a 212 compounds photo-CIDNP fragment library is presented, opening an avenue toward a comprehensive fragment-based screening method.

Identifiants

pubmed: 37227050
doi: 10.1021/jacs.3c01392
pmc: PMC10251509
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

12066-12080

Références

J Chem Inf Model. 2007 Mar-Apr;47(2):342-53
pubmed: 17260980
Science. 1997 Oct 17;278(5337):497,499
pubmed: 9381145
J Med Chem. 2007 Mar 22;50(6):1116-23
pubmed: 17315856
Nat Commun. 2022 Oct 20;13(1):6232
pubmed: 36266302
ACS Med Chem Lett. 2010 Feb 04;1(1):44-8
pubmed: 24900174
J Magn Reson. 2022 Dec;345:107323
pubmed: 36375285
Cancer Cell. 2003 Sep;4(3):175-80
pubmed: 14522251
J Phys Chem B. 2013 May 23;117(20):6069-81
pubmed: 23560683
FEBS J. 2019 Jun;286(11):2035-2042
pubmed: 30706658
J Am Chem Soc. 2012 Oct 24;134(42):17448-51
pubmed: 23020226
J Med Chem. 2022 Aug 25;65(16):11404-11413
pubmed: 35960886
J Virol. 2011 Sep;85(17):8777-88
pubmed: 21680504
J Am Chem Soc. 2009 Sep 16;131(36):12949-59
pubmed: 19702332
Prog Nucl Magn Reson Spectrosc. 2016 Nov;97:82-125
pubmed: 27888841
Nature. 1996 Apr 11;380(6574):544-7
pubmed: 8606777
J Phys Chem B. 2016 Feb 4;120(4):715-23
pubmed: 26744790
Bioorg Med Chem Lett. 2010 Nov 15;20(22):6483-8
pubmed: 20932746
Phys Rev Lett. 1986 Nov 24;57(21):2645-2648
pubmed: 10033824
Org Biomol Chem. 2013 Mar 21;11(11):1848-57
pubmed: 23361403
J Am Chem Soc. 2022 Jul 6;144(26):11608-11619
pubmed: 35700317
Chemphyschem. 2019 Jan 21;20(2):197-215
pubmed: 30328262
J Mol Biol. 2002 Jul 5;320(2):321-32
pubmed: 12079389
Nat Commun. 2019 Apr 15;10(1):1733
pubmed: 30988293
Nucleic Acids Res. 2019 Jan 8;47(D1):D930-D940
pubmed: 30398643
Phys Chem Chem Phys. 2021 Mar 21;23(11):6641-6650
pubmed: 33710192
J Magn Reson. 2004 May;168(1):1-7
pubmed: 15082243
Nat Commun. 2021 May 27;12(1):3201
pubmed: 34045440
Bioorg Med Chem Lett. 2010 Jan 15;20(2):586-90
pubmed: 19969456
Chemphyschem. 2018 Oct 5;19(19):2453-2456
pubmed: 29944199
J Med Chem. 1996 Jul 19;39(15):2887-93
pubmed: 8709122
Commun Chem. 2022 Aug 4;5(1):90
pubmed: 36697806
Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10158-63
pubmed: 12930897
Drug Discov Today. 2003 Oct 1;8(19):876-7
pubmed: 14554012
Methods Enzymol. 2019;615:501-526
pubmed: 30638540
J Am Chem Soc. 2002 Oct 16;124(41):12144-53
pubmed: 12371854
Biochemistry. 1998 Apr 28;37(17):5953-60
pubmed: 9558330
Angew Chem Int Ed Engl. 1999 Jun 14;38(12):1784-1788
pubmed: 29711196
J Chem Inf Model. 2015 Feb 23;55(2):460-73
pubmed: 25558886
J Chem Inf Model. 2017 Nov 27;57(11):2707-2718
pubmed: 29019686
Science. 2009 Mar 27;323(5922):1708-11
pubmed: 19325111
J Chem Phys. 2019 Dec 21;151(23):234201
pubmed: 31864237
Chem Sci. 2016 Mar 1;7(3):2322-2330
pubmed: 29910922
J Chem Inf Model. 2022 May 9;62(9):2164-2170
pubmed: 34445865
Eur Biophys J. 2011 Dec;40(12):1357-69
pubmed: 21947507
Anal Chem. 2022 Aug 16;94(32):11375-11381
pubmed: 35921650
RSC Med Chem. 2020 Apr 27;11(5):591-596
pubmed: 33479661
Neurobiol Aging. 2012 Apr;33(4):804-13
pubmed: 20580132
Sci Rep. 2016 Apr 25;6:24826
pubmed: 27109776
Anal Chem. 2016 Nov 15;88(22):11178-11183
pubmed: 27723298

Auteurs

Felix Torres (F)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.
NexMR GmbH, Wiesenstrasse 10A, 8952 Schlieren, Switzerland.

Matthias Bütikofer (M)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.

Gabriela R Stadler (GR)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.

Alois Renn (A)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.

Harindranath Kadavath (H)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.
St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678 United States.

Raitis Bobrovs (R)

Latvian Institute of Organic Synthesis, Aizkraukles street 21, LV-1006 Riga, Latvia.

Kristaps Jaudzems (K)

Latvian Institute of Organic Synthesis, Aizkraukles street 21, LV-1006 Riga, Latvia.

Roland Riek (R)

ETH, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.

Classifications MeSH