Risk prediction for dermatomyositis-associated hepatocellular carcinoma.


Journal

BMC bioinformatics
ISSN: 1471-2105
Titre abrégé: BMC Bioinformatics
Pays: England
ID NLM: 100965194

Informations de publication

Date de publication:
31 May 2023
Historique:
received: 02 02 2023
accepted: 25 05 2023
medline: 2 6 2023
pubmed: 1 6 2023
entrez: 31 5 2023
Statut: epublish

Résumé

To explore dermatomyositis signature genes as potential biomarkers of hepatocellular carcinoma and their associated molecular regulatory mechanisms. Based on the mRNA-Seq data of dermatomyositis and hepatocellular carcinoma in public databases, five dermatomyositis signature genes were screened by LASSO regression analysis and support vector machine (SVM) algorithm, and their biological functions in dermatomyositis with hepatocellular carcinoma were investigated, and a nomogram risk prediction model for hepatocellular carcinoma was constructed and its predictive efficiency was initially evaluated. The immune profile in hepatocellular carcinoma was examined based on the CIBERSORT and ssGSEA algorithms, and the correlation between five dermatomyositis signature genes and tumor immune cell infiltration and immune checkpoints in hepatocellular carcinoma was investigated. The expression levels of five dermatomyositis signature genes were significantly altered in hepatocellular carcinoma and showed good diagnostic efficacy for hepatocellular carcinoma, suggesting that they may be potential predictive targets for hepatocellular carcinoma, and the risk prediction model based on five dermatomyositis signature genes showed good risk prediction efficacy for hepatocellular carcinoma and has good potential for clinical application. In addition, we also found that the upregulation of SPP1 expression may activate the PI3K/ART signaling pathway through integrin-mediated activation, which in turn regulates the development and progression of hepatocellular carcinoma. LY6E, IFITM1, GADD45A, MT1M, and SPP1 are potential predictive targets for new-onset hepatocellular carcinoma in patients with dermatomyositis, and the upregulation of SPP1 expression may activate the PI3K/ART signaling pathway through the mediation of integrins to promote the development and progression of hepatocellular carcinoma.

Identifiants

pubmed: 37259059
doi: 10.1186/s12859-023-05353-6
pii: 10.1186/s12859-023-05353-6
pmc: PMC10233868
doi:

Substances chimiques

Phosphatidylinositol 3-Kinases EC 2.7.1.-

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

222

Informations de copyright

© 2023. The Author(s).

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Auteurs

Xusheng Zhang (X)

Ningxia Medical University, Yinchuan, 750004, China.

Yongxin Ma (Y)

Ningxia Medical University, Yinchuan, 750004, China.

Kejun Liu (K)

Ningxia Medical University, Yinchuan, 750004, China.
Department of Hepatobiliary Surgery, General Hospital of Ningxia Medical University, Yinchuan, 750004, China.
Ningxia Hepatobiliary and Pancreatic Surgical Diseases Clinical Medical Research Center, Yinchuan, 750004, China.

Long Chen (L)

Ningxia Medical University, Yinchuan, 750004, China.

Lin Ding (L)

Ningxia Medical University, Yinchuan, 750004, China.

Weihu Ma (W)

Ningxia Medical University, Yinchuan, 750004, China.

Bendong Chen (B)

Ningxia Medical University, Yinchuan, 750004, China. chenbendong@nxmu.edu.cn.
Department of Hepatobiliary Surgery, General Hospital of Ningxia Medical University, Yinchuan, 750004, China. chenbendong@nxmu.edu.cn.

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Classifications MeSH