Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
01 06 2023
Historique:
received: 27 04 2022
accepted: 10 05 2023
medline: 5 6 2023
pubmed: 2 6 2023
entrez: 1 6 2023
Statut: epublish

Résumé

Heat waves are causing declines in coral reefs globally. Coral thermal responses depend on multiple, interacting drivers, such as past thermal exposure, endosymbiont community composition, and host genotype. This makes the understanding of their relative roles in adaptive and/or plastic responses crucial for anticipating impacts of future warming. Here, we extracted DNA and RNA from 102 Pocillopora colonies collected from 32 sites on 11 islands across the Pacific Ocean to characterize host-photosymbiont fidelity and to investigate patterns of gene expression across a historical thermal gradient. We report high host-photosymbiont fidelity and show that coral and microalgal gene expression respond to different drivers. Differences in photosymbiotic association had only weak impacts on host gene expression, which was more strongly correlated with the historical thermal environment, whereas, photosymbiont gene expression was largely determined by microalgal lineage. Overall, our results reveal a three-tiered strategy of thermal acclimatization in Pocillopora underpinned by host-photosymbiont specificity, host transcriptomic plasticity, and differential photosymbiotic association under extreme warming.

Identifiants

pubmed: 37264036
doi: 10.1038/s41467-023-38610-6
pii: 10.1038/s41467-023-38610-6
pmc: PMC10235041
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3056

Informations de copyright

© 2023. The Author(s).

Références

Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Front Microbiol. 2019 Oct 18;10:2343
pubmed: 31681208
Genome Biol. 2014;15(12):550
pubmed: 25516281
Mol Ecol. 2011 Jan;20(2):311-25
pubmed: 21091563
Nature. 2017 May 31;546(7656):82-90
pubmed: 28569801
Mol Ecol. 2020 Aug;29(15):2940-2950
pubmed: 32585772
BMC Bioinformatics. 2016 Nov 25;17(1):483
pubmed: 27884101
Science. 2018 Jan 5;359(6371):80-83
pubmed: 29302011
Proc Biol Sci. 2010 Oct 7;277(1696):2925-34
pubmed: 20444713
Evolution. 2014 Feb;68(2):352-67
pubmed: 24134732
Mar Environ Res. 2018 Sep;140:444-454
pubmed: 30055833
PLoS One. 2013 Apr 08;8(4):e61048
pubmed: 23580325
Proc Biol Sci. 2015 Jun 22;282(1809):20141725
pubmed: 26041354
Mol Ecol. 2022 Oct;31(20):5368-5385
pubmed: 35960256
Biochem Biophys Res Commun. 2020 May 7;525(3):576-580
pubmed: 32115151
R Soc Open Sci. 2022 Jan 26;9(1):211449
pubmed: 35116156
Mol Ecol. 2021 Sep;30(18):4466-4480
pubmed: 34342082
Sci Data. 2023 Jun 1;10(1):324
pubmed: 37264023
Am J Physiol Regul Integr Comp Physiol. 2015 Aug 1;309(3):R235-46
pubmed: 26062631
Sci Rep. 2019 Jul 10;9(1):9985
pubmed: 31292499
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
Glob Chang Biol. 2021 Jun;27(12):2728-2743
pubmed: 33784420
Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):607-12
pubmed: 25548188
Nature. 2004 Aug 12;430(7001):742
pubmed: 15306800
Sci Rep. 2016 Nov 02;6:36271
pubmed: 27805069
Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1387-92
pubmed: 23297204
Commun Biol. 2022 May 19;5(1):486
pubmed: 35589814
ISME J. 2021 Nov;15(11):3271-3285
pubmed: 34012104
J Proteome Res. 2017 Jun 2;16(6):2121-2134
pubmed: 28474894
Curr Protoc Bioinformatics. 2020 Mar;69(1):e96
pubmed: 32162851
Genome Biol. 2010;11(2):R14
pubmed: 20132535
Sci Adv. 2020 May 13;6(20):eaba2498
pubmed: 32426508
Bioinformatics. 2021 Apr 19;37(2):192-201
pubmed: 32730587
Biochim Biophys Acta. 2004 May 27;1663(1-2):117-26
pubmed: 15157614
Mol Phylogenet Evol. 2017 Apr;109:430-446
pubmed: 28219759
Mol Ecol. 2009 Aug;18(16):3532-43
pubmed: 19627494
Glob Chang Biol. 2019 Oct;25(10):3294-3304
pubmed: 31301206
Sci Rep. 2019 May 28;9(1):7921
pubmed: 31138834
Front Microbiol. 2019 Sep 27;10:2248
pubmed: 31681188
Glob Chang Biol. 2018 Feb;24(2):e474-e484
pubmed: 29044761
Ecol Evol. 2013 May;3(5):1317-29
pubmed: 23762518
Mol Ecol. 2010 Mar;19(6):1174-86
pubmed: 20149089
Biostatistics. 2017 Apr 1;18(2):275-294
pubmed: 27756721
Nat Commun. 2019 Sep 17;10(1):4031
pubmed: 31530800
Evol Dev. 2007 Jul-Aug;9(4):355-67
pubmed: 17651360
Mol Ecol. 2014 Sep;23(17):4203-15
pubmed: 24909707
PLoS Biol. 2019 Sep 23;17(9):e3000483
pubmed: 31545807
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Nat Commun. 2018 Apr 26;9(1):1671
pubmed: 29700296
Sci Rep. 2015 Feb 27;5:8562
pubmed: 25720577
Ecol Evol. 2021 Mar 11;11(7):3393-3406
pubmed: 33841792
Mol Biol Evol. 2014 Jun;31(6):1343-52
pubmed: 24651035
Zool Stud. 2018 Nov 20;57:e55
pubmed: 31966295
Nat Commun. 2017 Feb 10;8:14213
pubmed: 28186132
PLoS One. 2011;6(10):e26687
pubmed: 22039532
Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4416-21
pubmed: 27044109
Bioinformatics. 2015 Nov 15;31(22):3718-20
pubmed: 26209431
Sci Data. 2017 Aug 01;4:170093
pubmed: 28763055
BMC Genet. 2010 Oct 15;11:94
pubmed: 20950446
Sci Rep. 2020 Sep 28;10(1):15893
pubmed: 32985530
Mol Ecol. 2020 Mar;29(5):899-911
pubmed: 32017263
Nucleic Acids Res. 2015 Jan;43(Database issue):D213-21
pubmed: 25428371
Mol Ecol. 2013 Aug;22(16):4322-4334
pubmed: 23899402
Bioinformatics. 2008 Jun 1;24(11):1403-5
pubmed: 18397895
Nat Commun. 2020 Dec 8;11(1):6097
pubmed: 33293528
Nat Ecol Evol. 2016 Nov 07;1(1):14
pubmed: 28812568
Proc Biol Sci. 2006 Sep 22;273(1599):2305-12
pubmed: 16928632
J Exp Biol. 2008 Apr;211(Pt 7):1050-6
pubmed: 18344478
Proc Natl Acad Sci U S A. 2021 May 11;118(19):
pubmed: 33941698
Commun Biol. 2018 Jul 17;1:95
pubmed: 30271976
J Exp Biol. 2018 Sep 27;221(Pt 18):
pubmed: 30065035
Mol Phylogenet Evol. 2023 Jul;184:107803
pubmed: 37120114
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
ISME J. 2015 Mar 17;9(4):844-56
pubmed: 25343511
BMC Evol Biol. 2012 Nov 12;12:217
pubmed: 23145489
Sci Data. 2023 Jun 1;10(1):326
pubmed: 37264047
Mol Ecol Resour. 2019 Jul;19(4):1063-1080
pubmed: 30740899
Proc Biol Sci. 2009 Dec 7;276(1676):4139-48
pubmed: 19740874
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417

Auteurs

Eric J Armstrong (EJ)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France. armstrong@berkeley.edu.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France. armstrong@berkeley.edu.
PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France. armstrong@berkeley.edu.

Julie Lê-Hoang (J)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Quentin Carradec (Q)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France. qcarrade@genoscope.cns.fr.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France. qcarrade@genoscope.cns.fr.

Jean-Marc Aury (JM)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Benjamin Noel (B)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Benjamin C C Hume (BCC)

Department of Biology, University of Konstanz, 78457, Konstanz, Germany.

Christian R Voolstra (CR)

Department of Biology, University of Konstanz, 78457, Konstanz, Germany.

Julie Poulain (J)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Caroline Belser (C)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

David A Paz-García (DA)

Centro de Investigaciones Biológicas del Noroeste (CIBNOR), Av. IPN 195, La Paz, Baja California Sur, 23096, México.

Corinne Cruaud (C)

Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.

Karine Labadie (K)

Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.

Corinne Da Silva (C)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Clémentine Moulin (C)

Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012, Paris, France.

Emilie Boissin (E)

PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.

Guillaume Bourdin (G)

School of Marine Sciences, University of Maine, Orono, 04469, ME, USA.

Guillaume Iwankow (G)

PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.

Sarah Romac (S)

Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, 29680, Roscoff, France.

Sylvain Agostini (S)

Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan.

Bernard Banaigs (B)

PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.

Emmanuel Boss (E)

School of Marine Sciences, University of Maine, Orono, 04469, ME, USA.

Chris Bowler (C)

Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Ecole Normale Supérieure, PSL Research University, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), CNRS UMR 8197, INSERM U1024, 46 rue d'Ulm, F-75005, Paris, France.

Colomban de Vargas (C)

Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, 29680, Roscoff, France.

Eric Douville (E)

Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191, Gif-sur-Yvette, France.

Michel Flores (M)

Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100, Rehovot, Israel.

Didier Forcioli (D)

Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France.
LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.

Paola Furla (P)

Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France.
LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.

Pierre E Galand (PE)

Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650, Banyuls sur mer, France.

Eric Gilson (E)

Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France.
LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.
Department of Medical Genetics, CHU, Nice, France.

Fabien Lombard (F)

Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Sorbonne Université, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230, Villefranche-sur-Mer, France.

Stéphane Pesant (S)

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

Stéphanie Reynaud (S)

LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.
Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco, Monaco.

Matthew B Sullivan (MB)

Departments of Microbiology and Civil, Environmental and Geodetic Engineering, Ohio State University, Columbus, OH, 43210, USA.

Shinichi Sunagawa (S)

Institute of Microbiology, Department of Biology, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland.

Olivier P Thomas (OP)

School of Biological and Chemical Sciences, Ryan institute, University of Galway, University Road H91TK33, Galway, Ireland.

Romain Troublé (R)

Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012, Paris, France.

Rebecca Vega Thurber (RV)

Oregon State University, Department of Microbiology, 220 Nash Hall, 97331, Corvallis, OR, USA.

Didier Zoccola (D)

LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.
Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco, Monaco.

Serge Planes (S)

PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 66860, Perpignan Cedex, France.

Denis Allemand (D)

LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Principality of Monaco, Monaco.
Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco, Monaco.

Patrick Wincker (P)

Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016, Paris, France.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH