DeepBreath-automated detection of respiratory pathology from lung auscultation in 572 pediatric outpatients across 5 countries.


Journal

NPJ digital medicine
ISSN: 2398-6352
Titre abrégé: NPJ Digit Med
Pays: England
ID NLM: 101731738

Informations de publication

Date de publication:
02 Jun 2023
Historique:
received: 30 07 2022
accepted: 05 05 2023
medline: 3 6 2023
pubmed: 3 6 2023
entrez: 2 6 2023
Statut: epublish

Résumé

The interpretation of lung auscultation is highly subjective and relies on non-specific nomenclature. Computer-aided analysis has the potential to better standardize and automate evaluation. We used 35.9 hours of auscultation audio from 572 pediatric outpatients to develop DeepBreath : a deep learning model identifying the audible signatures of acute respiratory illness in children. It comprises a convolutional neural network followed by a logistic regression classifier, aggregating estimates on recordings from eight thoracic sites into a single prediction at the patient-level. Patients were either healthy controls (29%) or had one of three acute respiratory illnesses (71%) including pneumonia, wheezing disorders (bronchitis/asthma), and bronchiolitis). To ensure objective estimates on model generalisability, DeepBreath is trained on patients from two countries (Switzerland, Brazil), and results are reported on an internal 5-fold cross-validation as well as externally validated (extval) on three other countries (Senegal, Cameroon, Morocco). DeepBreath differentiated healthy and pathological breathing with an Area Under the Receiver-Operator Characteristic (AUROC) of 0.93 (standard deviation [SD] ± 0.01 on internal validation). Similarly promising results were obtained for pneumonia (AUROC 0.75 ± 0.10), wheezing disorders (AUROC 0.91 ± 0.03), and bronchiolitis (AUROC 0.94 ± 0.02). Extval AUROCs were 0.89, 0.74, 0.74 and 0.87 respectively. All either matched or were significant improvements on a clinical baseline model using age and respiratory rate. Temporal attention showed clear alignment between model prediction and independently annotated respiratory cycles, providing evidence that DeepBreath extracts physiologically meaningful representations. DeepBreath provides a framework for interpretable deep learning to identify the objective audio signatures of respiratory pathology.

Identifiants

pubmed: 37268730
doi: 10.1038/s41746-023-00838-3
pii: 10.1038/s41746-023-00838-3
pmc: PMC10238513
doi:

Types de publication

Journal Article

Langues

eng

Pagination

104

Investigateurs

Florence Hugon (F)
Derrick Fassbind (D)
Makura Barro (M)
Georges Bediang (G)
N E L Hafidi (NEL)
M Bouskraoui (M)
Idrissa Ba (I)

Informations de copyright

© 2023. The Author(s).

Références

Diagnostics (Basel). 2021 Apr 20;11(4):
pubmed: 33924146
Breathe (Sheff). 2019 Mar;15(1):e20-e27
pubmed: 31031841
J Med Life. 2018 Apr-Jun;11(2):89-106
pubmed: 30140315
PLoS Med. 2018 Nov 6;15(11):e1002683
pubmed: 30399157
Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:527-530
pubmed: 34891348
IEEE J Biomed Health Inform. 2022 Jul;26(7):2898-2908
pubmed: 35061595
Ann Thorac Med. 2015 Jul-Sep;10(3):158-68
pubmed: 26229557
N Engl J Med. 2021 Jul 15;385(3):283-286
pubmed: 34260843
PeerJ Comput Sci. 2021 Feb 11;7:e369
pubmed: 33817019
Respir Med. 2011 Sep;105(9):1396-403
pubmed: 21676606
PLoS One. 2017 May 26;12(5):e0177926
pubmed: 28552969
Biometrics. 1988 Sep;44(3):837-45
pubmed: 3203132
PLoS One. 2019 Aug 12;14(8):e0220606
pubmed: 31404066
Eur J Pediatr. 2019 Jun;178(6):883-890
pubmed: 30927097

Auteurs

Julien Heitmann (J)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Alban Glangetas (A)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Jonathan Doenz (J)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Juliane Dervaux (J)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Deeksha M Shama (DM)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Daniel Hinjos Garcia (DH)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Mohamed Rida Benissa (MR)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Aymeric Cantais (A)

Pediatric Emergency Department, Hospital University of Saint Etienne, Saint Etienne, France.

Alexandre Perez (A)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Daniel Müller (D)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Tatjana Chavdarova (T)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Isabelle Ruchonnet-Metrailler (I)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Johan N Siebert (JN)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Laurence Lacroix (L)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Martin Jaggi (M)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.

Alain Gervaix (A)

Division of Pediatric Emergency Medicine, Department of Women, Child and Adolescent, Geneva University Hospitals (HUG), University of Geneva, Switzerland, Geneva, Switzerland.

Mary-Anne Hartley (MA)

Intelligent Global Health Research Group, Machine Learning and Optimization Laboratory, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland. mary-anne.hartley@epfl.ch.
Center for Intelligent Systems (CIS), Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland. mary-anne.hartley@epfl.ch.
Division of Pediatric Emergency Medicine, Department of Pediatrics, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland. mary-anne.hartley@epfl.ch.

Classifications MeSH