Non-coding RNAs and functional RNA elements in Thermus thermophilus.

ThermusQ annotation functional RNA non-coding RNA

Journal

The Journal of general and applied microbiology
ISSN: 1349-8037
Titre abrégé: J Gen Appl Microbiol
Pays: Japan
ID NLM: 0165543

Informations de publication

Date de publication:
15 Nov 2023
Historique:
pubmed: 5 6 2023
medline: 5 6 2023
entrez: 4 6 2023
Statut: ppublish

Résumé

To complete the ThermusQ database, small non-coding RNAs (ncRNAs) and functional RNA elements found in Thermus thermophilus were summarized with annotations. The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_nc004 to ttj8_nc013. Antisense RNAs for some ORFs were annotated as ttj8_EST00001 to ttj8_EST00006. In addition, a set of conserved sequences found in T. thermophilus HB27 were also described.

Identifiants

DOI: 10.2323/jgam.2023.05.001 PMID: 37271520
pubmed: 37271520
doi: 10.2323/jgam.2023.05.001
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

131-134

Auteurs

Gota Kawai (G)

Graduate School of Advanced Engineering, Chiba Institute of Technology.

Gen-Ichi Sampei (GI)

Graduate School of Informatics and Engineering, The University of Electro-Communications.

Makoto Nishiyama (M)

Graduate School of Agricultural and Life Sciences, The University of Tokyo.
Collaborative Research Institute for Innovative Microbiology, The University of Tokyo.

Yoshitaka Bessho (Y)

RIKEN SPring-8 Center, Harima Institute.
Center for Interdisciplinary AI and Data Science, Ochanomizu University.

Classifications MeSH