DNA barcoding in herbal medicine: Retrospective and prospective.
Cutting-edge barcoding
Herbal identification
Meta-barcoding
Mini-barcode
Super-barcode
Journal
Journal of pharmaceutical analysis
ISSN: 2214-0883
Titre abrégé: J Pharm Anal
Pays: China
ID NLM: 101579451
Informations de publication
Date de publication:
May 2023
May 2023
Historique:
received:
09
11
2022
revised:
07
03
2023
accepted:
25
03
2023
medline:
12
6
2023
pubmed:
12
6
2023
entrez:
12
6
2023
Statut:
ppublish
Résumé
DNA barcoding has been widely used for herb identification in recent decades, enabling safety and innovation in the field of herbal medicine. In this article, we summarize recent progress in DNA barcoding for herbal medicine to provide ideas for the further development and application of this technology. Most importantly, the standard DNA barcode has been extended in two ways. First, while conventional DNA barcodes have been widely promoted for their versatility in the identification of fresh or well-preserved samples, super-barcodes based on plastid genomes have rapidly developed and have shown advantages in species identification at low taxonomic levels. Second, mini-barcodes are attractive because they perform better in cases of degraded DNA from herbal materials. In addition, some molecular techniques, such as high-throughput sequencing and isothermal amplification, are combined with DNA barcodes for species identification, which has expanded the applications of herb identification based on DNA barcoding and brought about the post-DNA-barcoding era. Furthermore, standard and high-species coverage DNA barcode reference libraries have been constructed to provide reference sequences for species identification, which increases the accuracy and credibility of species discrimination based on DNA barcodes. In summary, DNA barcoding should play a key role in the quality control of traditional herbal medicine and in the international herb trade.
Identifiants
pubmed: 37305789
doi: 10.1016/j.jpha.2023.03.008
pii: S2095-1779(23)00059-X
pmc: PMC10257146
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
431-441Informations de copyright
© 2023 The Authors.
Références
Sci Rep. 2016 May 05;6:25370
pubmed: 27146605
Biol Pharm Bull. 2007 Nov;30(11):2229-30
pubmed: 17978508
BMC Complement Altern Med. 2015 May 30;15:162
pubmed: 26024888
Sci Rep. 2016 Oct 07;6:34940
pubmed: 27713564
Biotechnol Adv. 2014 Nov 15;32(7):1237-1244
pubmed: 25087935
Int J Legal Med. 2017 Jan;131(1):1-19
pubmed: 27796590
Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1959-67
pubmed: 16214753
Clin Chem. 2003 Jun;49(6 Pt 1):853-60
pubmed: 12765979
BMC Genet. 2014 Dec 20;15:138
pubmed: 25526752
Ecol Evol. 2015 May;5(9):1818-25
pubmed: 26140198
Front Pharmacol. 2020 Dec 17;11:585687
pubmed: 33390955
Planta Med. 2019 Jan;85(2):139-144
pubmed: 30064144
Int J Mol Sci. 2015 Jan 09;16(1):1562-75
pubmed: 25584616
Plant Biotechnol J. 2011 Apr;9(3):328-33
pubmed: 20796245
Chin Med. 2021 Jul 5;16(1):52
pubmed: 34225754
BMC Complement Altern Med. 2016 Jul 18;16 Suppl 1:186
pubmed: 27454470
PLoS One. 2010 Jan 07;5(1):e8613
pubmed: 20062805
Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Jan;29(1):107-112
pubmed: 27871217
PLoS One. 2015 Sep 25;10(9):e0138888
pubmed: 26406615
Planta Med. 2008 May;74(6):603-23
pubmed: 18449847
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):483-9
pubmed: 24857374
Proc Biol Sci. 2003 Aug 7;270 Suppl 1:S96-9
pubmed: 12952648
Front Pharmacol. 2018 Jul 03;9:695
pubmed: 30034337
Ecol Appl. 2022 Jan;32(1):e02469
pubmed: 34626511
Phytochem Anal. 2018 Mar;29(2):123-128
pubmed: 28906059
BMC Plant Biol. 2009 Nov 17;9:131
pubmed: 19917140
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):3945-3951
pubmed: 25541315
Chin J Nat Med. 2017 Jul;15(7):481-486
pubmed: 28807221
Ecotoxicol Environ Saf. 2022 Jun 1;237:113539
pubmed: 35489139
Front Plant Sci. 2019 Feb 05;10:68
pubmed: 30804961
Phytochem Anal. 2021 Sep;32(5):804-810
pubmed: 33527609
PLoS One. 2019 Jan 24;14(1):e0210492
pubmed: 30677051
PLoS One. 2009 Jun 29;4(6):e6069
pubmed: 19562076
Acta Pharm Sin B. 2020 Jul;10(7):1192-1204
pubmed: 32834949
PLoS One. 2013;8(2):e57934
pubmed: 23460915
Foods. 2022 May 19;11(10):
pubmed: 35627046
Mol Ecol. 2016 Apr;25(7):1423-8
pubmed: 26821259
Biotechniques. 1997 Jan;22(1):130-1, 134-8
pubmed: 8994660
Planta Med. 2022 Oct;88(12):985-993
pubmed: 34544191
Mol Ecol Resour. 2022 May;22(4):1478-1492
pubmed: 34752673
Chin J Nat Med. 2016 Dec;14(12):898-903
pubmed: 28262116
Front Plant Sci. 2017 Sep 13;8:1578
pubmed: 28955365
Front Pharmacol. 2020 Nov 26;11:488193
pubmed: 33324200
Mol Biol Rep. 2014 Aug;41(8):5147-55
pubmed: 24802796
Food Chem. 2013 Dec 1;141(3):2522-5
pubmed: 23870990
Front Zool. 2013 Aug 07;10(1):45
pubmed: 23919569
Sci Rep. 2015 Jul 22;5:12162
pubmed: 26199185
Front Pharmacol. 2021 Feb 16;12:607200
pubmed: 33664667
Mol Ecol Resour. 2015 Sep;15(5):1216-25
pubmed: 25655349
Front Plant Sci. 2016 Jun 20;7:887
pubmed: 27379153
Front Microbiol. 2017 Jun 21;8:1179
pubmed: 28680424
Nucleic Acids Res. 2007;35(3):e14
pubmed: 17169982
Mol Ecol. 2008 Dec;17(24):5175-6
pubmed: 19067801
Sci Rep. 2018 Jan 31;8(1):1924
pubmed: 29386579
Am J Bot. 2012 Feb;99(2):320-9
pubmed: 22301895
Clin Chem. 2006 Mar;52(3):494-503
pubmed: 16423901
Clin Chem. 2004 Oct;50(10):1748-54
pubmed: 15308590
Sci Rep. 2016 Jan 07;6:18723
pubmed: 26740340
Genome. 2014 Sep;57(9):513-6
pubmed: 25495290
PeerJ. 2021 Oct 20;9:e12325
pubmed: 34721994
Biomed Res Int. 2014;2014:809037
pubmed: 25548775
Genet Mol Res. 2015 Oct 30;14(4):13981-97
pubmed: 26535713
Anal Biochem. 2005 Nov 1;346(1):167-75
pubmed: 16188219
Mol Ecol Resour. 2019 Jul;19(4):838-846
pubmed: 30703281
Food Chem. 2020 Mar 30;309:125653
pubmed: 31670116
Mol Ecol Resour. 2015 Jul;15(4):932-44
pubmed: 25469426
Food Chem. 2015 Apr 15;173:1054-8
pubmed: 25466124
PLoS One. 2012;7(8):e43971
pubmed: 22952830
PLoS One. 2015 Jan 20;10(1):e0115168
pubmed: 25602282
Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13950-5
pubmed: 16172379
Front Plant Sci. 2019 Aug 28;10:987
pubmed: 31555305
Anal Bioanal Chem. 2020 Mar;412(7):1701-1707
pubmed: 31965247
Acta Pharm Sin B. 2023 May;13(5):2234-2249
pubmed: 37250171
PLoS Biol. 2006 Jul;4(7):e204
pubmed: 16756388
Front Plant Sci. 2016 Mar 18;7:319
pubmed: 27047504
Chin Med. 2015 Jan 30;10(1):1
pubmed: 25657815
Plant Commun. 2023 May 8;4(3):100516
pubmed: 36597358
Acta Pharm Sin B. 2022 Nov;12(11):4075-4097
pubmed: 36386468
Molecules. 2022 Apr 06;27(7):
pubmed: 35408741
Sci Rep. 2016 Dec 16;6:39183
pubmed: 27982132
PLoS Negl Trop Dis. 2015 Jul 10;9(7):e0003884
pubmed: 26161793
Ecotoxicol Environ Saf. 2021 Jan 15;208:111691
pubmed: 33396023
Genes (Basel). 2019 May 22;10(5):
pubmed: 31121984
Anal Bioanal Chem. 2009 Jan;393(2):569-82
pubmed: 18696055
Chin J Nat Med. 2019 May 20;17(5):337-345
pubmed: 31171268
PLoS One. 2018 Jul 25;13(7):e0201240
pubmed: 30044868
Front Plant Sci. 2016 Mar 30;7:367
pubmed: 27066026
Nat Plants. 2023 Jan;9(1):179-190
pubmed: 36522449
Taxon. 2008 Nov 1;57(4):1304-1316
pubmed: 19779570
Acta Pharm Sin B. 2018 May;8(3):488-497
pubmed: 29881688
Food Chem. 2017 Jan 1;214:631-636
pubmed: 27507519
BMC Bioinformatics. 2011;12 Suppl 13:S4
pubmed: 22373238
BMC Genomics. 2008 May 12;9:214
pubmed: 18474098
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4668-4669
pubmed: 26709874
Hortic Res. 2022 Mar 23;9:uhac075
pubmed: 35669712
Front Plant Sci. 2018 Nov 13;9:1643
pubmed: 30483295
Plants (Basel). 2022 Apr 15;11(8):
pubmed: 35448806
PLoS One. 2011;6(10):e26619
pubmed: 22039517
Sci Rep. 2018 May 22;8(1):8002
pubmed: 29789688
Sci Rep. 2017 Jul 19;7(1):5858
pubmed: 28724933
Vet Parasitol. 2021 Feb;290:109344
pubmed: 33465567
Anal Biochem. 1997 Feb 15;245(2):154-60
pubmed: 9056205
PLoS One. 2014 Nov 05;9(11):e112146
pubmed: 25372030
Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6
pubmed: 22454494
Gene. 2016 Dec 15;594(2):238-247
pubmed: 27632899
Small. 2022 Sep;18(36):e2200858
pubmed: 35411651
Front Pharmacol. 2019 Nov 29;10:1441
pubmed: 31849682
PLoS One. 2010 Oct 01;5(10):
pubmed: 20957043
Plant J. 2017 Jun;90(5):1014-1025
pubmed: 28231382
Mol Ecol Resour. 2014 Nov;14(6):1231-8
pubmed: 24739357
Food Chem. 2016 Dec 15;213:388-394
pubmed: 27451195
Evid Based Complement Alternat Med. 2018 Apr 22;2018:5160254
pubmed: 29849709
Biol Rev Camb Philos Soc. 2015 Feb;90(1):157-66
pubmed: 24666563
Stud Mycol. 2019 Mar;92:135-154
pubmed: 29955203
Sci Total Environ. 2019 Aug 15;678:499-524
pubmed: 31077928
PLoS One. 2012;7(11):e48833
pubmed: 23155412
PLoS One. 2019 Jun 19;14(6):e0217084
pubmed: 31216285
BMC Biol. 2009 Dec 02;7:84
pubmed: 19954512
Acta Trop. 2021 Jul;219:105913
pubmed: 33831346
PLoS Biol. 2004 Oct;2(10):e312
pubmed: 15455034
J Adv Res. 2018 Nov 23;16:123-134
pubmed: 30899595
Sci Rep. 2022 Apr 9;12(1):5988
pubmed: 35397643
Mol Plant. 2022 Aug 1;15(8):1310-1328
pubmed: 35655434
Nature. 2005 Apr 28;434(7037):1067
pubmed: 15858548
PLoS One. 2012;7(2):e30621
pubmed: 22363454
Mol Ecol Resour. 2022 Jan;22(1):404-414
pubmed: 34310851
Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14812-7
pubmed: 15465915
J Pharm Biomed Anal. 2016 Sep 10;129:398-404
pubmed: 27468133
Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19641-6
pubmed: 22100737
PLoS One. 2012;7(3):e34506
pubmed: 22479636
Food Chem. 2021 Sep 1;355:129525
pubmed: 33799266
Sci Rep. 2015 Oct 30;5:15894
pubmed: 26516098
PLoS One. 2011 Apr 15;6(4):e18749
pubmed: 21526211
Int J Mol Sci. 2016 Aug 03;17(8):
pubmed: 27527151
J Infect Chemother. 2009 Apr;15(2):62-9
pubmed: 19396514
Expert Rev Mol Diagn. 2021 Jan;21(1):119-129
pubmed: 33380245
Syst Biol. 2020 Sep 1;69(5):999-1015
pubmed: 32065638
Biosens Bioelectron. 2017 Apr 15;90:459-474
pubmed: 27818047
PLoS One. 2018 Jun 1;13(6):e0198109
pubmed: 29856794
Science. 2009 Aug 7;325(5941):682-3
pubmed: 19644072
PLoS One. 2007 Jun 06;2(6):e508
pubmed: 17551588
Front Pharmacol. 2017 Dec 19;8:931
pubmed: 29326593
J Ethnopharmacol. 2020 Oct 28;261:113134
pubmed: 32668322
Zhongguo Zhong Yao Za Zhi. 2015 Jun;40(12):2304-8
pubmed: 26591514