A community effort for COVID-19 Ontology Harmonization.

COVID-19 Knowledge integration SARS-CoV-2 harmonization ontology

Journal

CEUR workshop proceedings
ISSN: 1613-0073
Titre abrégé: CEUR Workshop Proc
Pays: Germany
ID NLM: 101560115

Informations de publication

Date de publication:
2022
Historique:
medline: 1 1 2022
pubmed: 1 1 2022
entrez: 16 6 2023
Statut: ppublish

Résumé

Ontologies have emerged to become critical to support data and knowledge representation, standardization, integration, and analysis. The SARS-CoV-2 pandemic led to the rapid proliferation of COVID-19 data, as well as the development of many COVID-19 ontologies. In the interest of supporting data interoperability, we initiated a community-based effort to harmonize COVID-19 ontologies. Our effort involves the collaborative discussion among developers of seven COVID-19 related ontologies, and the merging of four ontologies. This effort demonstrates the feasibility of harmonizing these ontologies in an interoperable framework to support integrative representation and analysis of COVID-19 related data and knowledge.

Identifiants

pubmed: 37324543
pmc: PMC10262777
mid: NIHMS1877993

Types de publication

Journal Article

Langues

eng

Pagination

122-127

Subventions

Organisme : NLM NIH HHS
ID : T15 LM012495
Pays : United States
Organisme : NIAID NIH HHS
ID : UH2 AI132931
Pays : United States

Références

Sci Data. 2020 Jun 12;7(1):181
pubmed: 32533075
Sci Data. 2021 Jan 13;8(1):16
pubmed: 33441564
J Biomed Semantics. 2021 Jul 18;12(1):13
pubmed: 34275487

Auteurs

Asiyah Yu Lin (AY)

National Human Genome Research Institute, NIH, Bethesda, MD, USA.

William D Duncan (WD)

Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Leigh C Carmody (LC)

The Jackson Laboratory, Bar Harbor, ME, USA.

Tatsuya Kushida (T)

RIKEN, Japan.

Hiroshi Masuya (H)

RIKEN, Japan.

John Beverley (J)

Northwest University, Evanston, Il, USA.

Biswanath Dutta (B)

Indian Statistical Institute Bangalore Centre, India.

Michael DeBellis (M)

Individual Consultant and Researcher, San Francisco, CA, USA.

Zoë May Pendlington (ZM)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Paola Roncaglia (P)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Yongqun He (Y)

University of Michigan Medical School, Ann Arbor, MI, USA.

Classifications MeSH