Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse.
Atherosclerosis
Coronary Artery Disease
Cross-species Comparison
GWAS
Gene Networks
Human
Liver
Mouse
Multiomics
Vascular Tissues
Journal
bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187
Informations de publication
Date de publication:
20 Sep 2023
20 Sep 2023
Historique:
pubmed:
19
6
2023
medline:
19
6
2023
entrez:
19
6
2023
Statut:
epublish
Résumé
Mouse models have been used extensively to study human coronary artery disease (CAD) or atherosclerosis and to test therapeutic targets. However, whether mouse and human share similar genetic factors and pathogenic mechanisms of atherosclerosis has not been thoroughly investigated in a data-driven manner. We conducted a cross-species comparison study to better understand atherosclerosis pathogenesis between species by leveraging multiomics data. Specifically, we compared genetically driven and thus CAD-causal gene networks and pathways, by using human GWAS of CAD from the CARDIoGRAMplusC4D consortium and mouse GWAS of atherosclerosis from the Hybrid Mouse Diversity Panel (HMDP) followed by integration with functional multiomics human (STARNET and GTEx) and mouse (HMDP) databases. We found that mouse and human shared >75% of CAD causal pathways. Based on network topology, we then predicted key regulatory genes for both the shared pathways and species-specific pathways, which were further validated through the use of single cell data and the latest CAD GWAS. In sum, our results should serve as a much-needed guidance for which human CAD-causal pathways can or cannot be further evaluated for novel CAD therapies using mouse models.
Identifiants
pubmed: 37333408
doi: 10.1101/2023.06.08.544148
pmc: PMC10274918
pii:
doi:
Types de publication
Preprint
Langues
eng
Subventions
Organisme : NIDDK NIH HHS
ID : R01 DK117850
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL148167
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL168174
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL148239
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL164577
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL147883
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL166428
Pays : United States