Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales.

Bacteroides inflammatory bowel disease microbiome structural biology type VI secretion system

Journal

mBio
ISSN: 2150-7511
Titre abrégé: mBio
Pays: United States
ID NLM: 101519231

Informations de publication

Date de publication:
31 Aug 2023
Historique:
pubmed: 22 6 2023
medline: 22 6 2023
entrez: 22 6 2023
Statut: ppublish

Résumé

Bacteroidales use type VI secretion systems (T6SS) to competitively colonize and persist in the colon. We identify a horizontally transferred T6SS with Ntox15 family nuclease effector (Tde1) that mediates interbacterial antagonism among Bacteroidales, including several derived from a single human donor. Expression of cognate (Tdi1) or orphan immunity proteins in acquired interbacterial defense systems protects against Tde1-dependent attack. We find that immunity protein interaction induces a large effector conformational change in Tde nucleases, disrupting the active site and altering the DNA-binding site. Crystallographic snapshots of isolated Tde1, the Tde1/Tdi1 complex, and homologs from

Identifiants

pubmed: 37345922
doi: 10.1128/mbio.01039-23
pmc: PMC10470768
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0103923

Subventions

Organisme : NIAID NIH HHS
ID : K08 AI159619
Pays : United States
Organisme : NIAID NIH HHS
ID : K08 AI159619
Pays : United States

Déclaration de conflit d'intérêts

The authors declare no conflict of interest.

Références

Nature. 2020 Jul;583(7817):631-637
pubmed: 32641830
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Cell. 2018 Nov 15;175(5):1380-1392.e14
pubmed: 30343895
PLoS Pathog. 2022 Jan 5;18(1):e1010182
pubmed: 34986192
Microbiol Mol Biol Rev. 2007 Mar;71(1):158-229
pubmed: 17347522
EMBO Rep. 2017 Nov;18(11):1978-1990
pubmed: 28912123
Nature. 2019 Nov;575(7781):224-228
pubmed: 31666699
EMBO Rep. 2016 Sep;17(9):1281-91
pubmed: 27432285
Front Immunol. 2022 Nov 30;13:1036196
pubmed: 36531989
Cell Host Microbe. 2014 Sep 10;16(3):276-89
pubmed: 25211071
Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):E3931-40
pubmed: 27313214
Mol Cell. 2013 Sep 12;51(5):584-93
pubmed: 23954347
Cell Host Microbe. 2014 Jul 9;16(1):94-104
pubmed: 24981331
J Mol Biol. 2000 Sep 1;301(5):1163-78
pubmed: 10966813
J Mol Biol. 2020 Mar 27;432(7):2428-2443
pubmed: 32142788
Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3639-44
pubmed: 26957597
Nat Methods. 2022 Jun;19(6):679-682
pubmed: 35637307
Microbiome. 2022 Aug 24;10(1):133
pubmed: 35999575
Biol Direct. 2012 Jun 25;7:18
pubmed: 22731697
Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3627-32
pubmed: 26951680
Protein Sci. 2004 Jun;13(6):1603-11
pubmed: 15133158
Nature. 2019 May;569(7758):655-662
pubmed: 31142855
Methods Mol Biol. 2020;2112:29-42
pubmed: 32006276
Cell Host Microbe. 2017 Sep 13;22(3):411-419.e4
pubmed: 28910638
Front Cell Infect Microbiol. 2020 Jun 23;10:291
pubmed: 32656098
EMBO Rep. 2020 Jan 7;21(1):e47961
pubmed: 31808291
Infect Immun. 2021 Jun 16;89(7):e0057920
pubmed: 33875476
Nature. 2009 Jan 22;457(7228):480-4
pubmed: 19043404
Inflamm Bowel Dis. 2019 Jan 1;25(1):85-96
pubmed: 30215718
Virulence. 2017 Oct 3;8(7):1189-1202
pubmed: 28060574
Trends Biochem Sci. 2001 Oct;26(10):624-31
pubmed: 11590016
Nature. 2019 Nov;575(7784):674-678
pubmed: 31695193
J Mol Biol. 2007 Sep 21;372(3):774-97
pubmed: 17681537
Nucleic Acids Res. 2018 Jul 2;46(W1):W200-W204
pubmed: 29905871
Inflamm Bowel Dis. 2023 Feb 1;29(2):286-296
pubmed: 35972440
Cell Host Microbe. 2020 Jul 8;28(1):134-146.e4
pubmed: 32492369
Microbiol Spectr. 2019 Jul;7(4):
pubmed: 31298206
Cell Rep. 2019 Oct 1;29(1):187-201.e7
pubmed: 31577948
PLoS Genet. 2021 Apr 26;17(4):e1009541
pubmed: 33901198
Elife. 2022 Oct 13;11:
pubmed: 36226828
Curr Protoc Microbiol. 2008 May;Chapter 13:Unit 13C.1
pubmed: 18770533
Annu Rev Genet. 1998;32:255-78
pubmed: 9928481
Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303
pubmed: 29788355
Elife. 2021 Jan 15;10:
pubmed: 33448264
Science. 2018 Feb 2;359(6375):592-597
pubmed: 29420293
mBio. 2014 Jun 17;5(3):e01305-14
pubmed: 24939888
Nat Commun. 2021 Dec 1;12(1):6998
pubmed: 34853317
Nature. 2020 May;581(7808):310-315
pubmed: 32433607
Nat Biotechnol. 2019 Feb;37(2):186-192
pubmed: 30718869
Nature. 2016 Jul 21;535(7612):376-81
pubmed: 27409811
J Biol Chem. 2013 Feb 22;288(8):5928-39
pubmed: 23288853
Protein Sci. 2022 Aug;31(8):e4379
pubmed: 35900023
BMC Genomics. 2016 Jan 15;17:58
pubmed: 26768901
Cell. 2020 Nov 25;183(5):1312-1324.e10
pubmed: 33212011
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Nat Rev Microbiol. 2014 Feb;12(2):137-48
pubmed: 24384601
Q Rev Biophys. 2012 Feb;45(1):57-103
pubmed: 22085441

Auteurs

Dustin E Bosch (DE)

Department of Pathology, Carver College of Medicine, University of Iowa , Iowa City, Iowa, USA.

Romina Abbasian (R)

Department of Pathology, Carver College of Medicine, University of Iowa , Iowa City, Iowa, USA.

Bishal Parajuli (B)

Department of Pathology, Carver College of Medicine, University of Iowa , Iowa City, Iowa, USA.

S Brook Peterson (SB)

Department of Microbiology, University of Washington School of Medicine , Seattle, Washington, USA.
Howard Hughes Medical Institute, University of Washington , Seattle, Washington, USA.

Joseph D Mougous (JD)

Department of Microbiology, University of Washington School of Medicine , Seattle, Washington, USA.
Howard Hughes Medical Institute, University of Washington , Seattle, Washington, USA.
Microbial Interactions and Microbiome Center, University of Washington , Seattle, Washington, USA.

Classifications MeSH