Microbiome Interconnectedness throughout Environments with Major Consequences for Healthy People and a Healthy Planet.
microbiome interconnectedness
microbiome transfer
Journal
Microbiology and molecular biology reviews : MMBR
ISSN: 1098-5557
Titre abrégé: Microbiol Mol Biol Rev
Pays: United States
ID NLM: 9706653
Informations de publication
Date de publication:
26 09 2023
26 09 2023
Historique:
pmc-release:
27
06
2024
medline:
27
9
2023
pubmed:
27
6
2023
entrez:
27
6
2023
Statut:
ppublish
Résumé
Microbiomes have highly important roles for ecosystem functioning and carry out key functions that support planetary health, including nutrient cycling, climate regulation, and water filtration. Microbiomes are also intimately associated with complex multicellular organisms such as humans, other animals, plants, and insects and perform crucial roles for the health of their hosts. Although we are starting to understand that microbiomes in different systems are interconnected, there is still a poor understanding of microbiome transfer and connectivity. In this review we show how microbiomes are connected within and transferred between different habitats and discuss the functional consequences of these connections. Microbiome transfer occurs between and within abiotic (e.g., air, soil, and water) and biotic environments, and can either be mediated through different vectors (e.g., insects or food) or direct interactions. Such transfer processes may also include the transmission of pathogens or antibiotic resistance genes. However, here, we highlight the fact that microbiome transmission can have positive effects on planetary and human health, where transmitted microorganisms potentially providing novel functions may be important for the adaptation of ecosystems.
Identifiants
pubmed: 37367231
doi: 10.1128/mmbr.00212-22
pmc: PMC10521359
doi:
Substances chimiques
Soil
0
Water
059QF0KO0R
Types de publication
Journal Article
Review
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0021222Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
Références
Int J Infect Dis. 2011 Jul;15(7):e503
pubmed: 21511508
Trends Microbiol. 2023 Apr;31(4):346-355
pubmed: 36481186
Water Res. 2004 Apr;38(8):1989-94
pubmed: 15087179
Nat Commun. 2020 Mar 18;11(1):1427
pubmed: 32188862
Sci Total Environ. 2017 Dec 1;599-600:1140-1148
pubmed: 28511359
Sci Rep. 2019 Jan 24;9(1):703
pubmed: 30679677
Front Microbiol. 2015 Aug 28;6:887
pubmed: 26379656
Phytopathology. 2013 Apr;103(4):381-8
pubmed: 23506364
Prog Neuropsychopharmacol Biol Psychiatry. 2021 Jul 13;109:110258
pubmed: 33497754
Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2575-80
pubmed: 23359712
J Nutr. 2022 Jul 6;152(7):1729-1736
pubmed: 35583208
J Asthma Allergy. 2021 May 25;14:557-573
pubmed: 34079294
Arch Virol. 2016 Feb;161(2):503-6
pubmed: 26586328
Microb Drug Resist. 2020 Oct;26(10):1174-1185
pubmed: 32354251
PLoS One. 2014 Oct 06;9(10):e108691
pubmed: 25285444
Appl Environ Microbiol. 2016 Dec 30;83(2):
pubmed: 27815277
Microb Biotechnol. 2018 Jul;11(4):571-574
pubmed: 29927545
Appl Environ Microbiol. 2006 Jan;72(1):66-70
pubmed: 16391026
Appl Environ Microbiol. 2016 Jun 13;82(13):3822-33
pubmed: 27107117
Appl Microbiol. 1974 Sep;28(3):456-9
pubmed: 4371331
FEMS Yeast Res. 2021 Mar 18;21(2):
pubmed: 33595651
Science. 2014 Aug 29;345(6200):1048-52
pubmed: 25170151
Environ Pollut. 2016 Apr;211:48-57
pubmed: 26736055
Environ Pollut. 2020 Jun;261:114201
pubmed: 32109819
PLoS One. 2013 Jul 03;8(7):e67556
pubmed: 23844027
mSystems. 2020 Apr 7;5(2):
pubmed: 32265313
Int J Food Microbiol. 2012 Aug 17;158(2):140-6
pubmed: 22831820
Front Microbiol. 2017 Nov 29;8:2336
pubmed: 29238327
Environ Microbiol. 2016 Dec;18(12):5161-5174
pubmed: 27612299
Sci Rep. 2017 Jan 17;7:40597
pubmed: 28094284
Microbiol Mol Biol Rev. 2007 Jun;71(2):295-347
pubmed: 17554047
Gut. 2018 Aug;67(8):1445-1453
pubmed: 29269438
Front Microbiol. 2021 Feb 05;12:632935
pubmed: 33613505
Environ Microbiol. 2021 Apr;23(4):2199-2214
pubmed: 33427409
J Allergy Clin Immunol. 2017 Jul;140(1):24-40
pubmed: 28673401
ISME J. 2019 Nov;13(11):2789-2799
pubmed: 31316133
Front Microbiol. 2022 Jun 23;13:894241
pubmed: 35814695
Environ Microbiome. 2022 Mar 7;17(1):10
pubmed: 35256002
Sci Rep. 2015 Sep 24;5:14233
pubmed: 26400688
Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15728-33
pubmed: 24019469
Nat Rev Microbiol. 2020 Feb;18(2):97-111
pubmed: 31907461
Crit Rev Microbiol. 2008;34(3-4):143-61
pubmed: 18728991
Microb Ecol. 2017 Jan;73(1):188-200
pubmed: 27592345
Nat Commun. 2020 May 25;11(1):2610
pubmed: 32451391
Microorganisms. 2020 Jun 23;8(6):
pubmed: 32585961
J Hazard Mater. 2021 Jan 5;401:123424
pubmed: 33113716
Environ Microbiol. 2021 Apr;23(4):1812-1829
pubmed: 32955144
Nature. 2023 Feb;614(7946):125-135
pubmed: 36653448
Proc Biol Sci. 2020 Feb 12;287(1920):20192754
pubmed: 32075531
Front Microbiol. 2015 Dec 22;6:1454
pubmed: 26733988
Plant J. 2022 Feb;109(3):508-522
pubmed: 34743401
Microb Ecol. 2021 Nov;82(4):859-869
pubmed: 33656686
iScience. 2022 Feb 10;25(3):103887
pubmed: 35243247
Cell Host Microbe. 2015 May 13;17(5):690-703
pubmed: 25974306
EFSA J. 2022 Mar 29;20(3):e07209
pubmed: 35382452
Nat Commun. 2017 Mar 07;8:14668
pubmed: 28267145
Ann Bot. 2012 Nov;110(6):1173-83
pubmed: 22915578
ISME J. 2008 Mar;2(3):321-34
pubmed: 18185595
Acta Med Acad. 2020 Aug;49(2):144-155
pubmed: 33189120
Nat Commun. 2018 May 22;9(1):2017
pubmed: 29789621
PLoS One. 2013;8(3):e59310
pubmed: 23544058
Elife. 2019 Feb 12;8:
pubmed: 30747106
Sci Adv. 2020 Feb 19;6(8):eaay8676
pubmed: 32128414
Front Microbiol. 2021 Oct 22;12:737616
pubmed: 34745040
Trends Microbiol. 2015 Nov;23(11):719-729
pubmed: 26439296
Nat Microbiol. 2019 Jun;4(6):964-971
pubmed: 30911128
FEMS Microbiol Rev. 2022 Jul 1;46(4):
pubmed: 35137064
Microb Genom. 2016 Oct 21;2(10):e000089
pubmed: 28348830
ISME J. 2012 Aug;6(8):1469-79
pubmed: 22278670
Microorganisms. 2020 Aug 21;8(9):
pubmed: 32825568
Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5
pubmed: 20566857
Microbiome. 2022 Dec 9;10(1):216
pubmed: 36482381
Sci Rep. 2021 Aug 24;11(1):17106
pubmed: 34429455
Curr Opin Biotechnol. 2022 Feb;73:171-178
pubmed: 34479027
Cell Rep Med. 2020 Dec 22;1(9):100156
pubmed: 33377127
Nat Plants. 2021 Jan;7(1):60-72
pubmed: 33398157
BMC Vet Res. 2022 May 27;18(1):203
pubmed: 35624502
Int J Food Microbiol. 2019 Aug 2;302:15-23
pubmed: 30172443
FEMS Microbiol Ecol. 2015 Jul;91(7):
pubmed: 26183916
J Environ Manage. 2021 Sep 15;294:113018
pubmed: 34144322
Nature. 2014 Jan 23;505(7484):559-63
pubmed: 24336217
Indoor Air. 2017 May;27(3):564-575
pubmed: 27687789
Microbiome. 2020 Nov 19;8(1):164
pubmed: 33213522
mSphere. 2020 Jan 15;5(1):
pubmed: 31941818
Curr Opin Biotechnol. 2022 Feb;73:164-170
pubmed: 34474311
PLoS One. 2011;6(7):e22751
pubmed: 21799941
Front Microbiol. 2017 Jan 23;8:11
pubmed: 28167932
Sci Rep. 2020 Nov 26;10(1):20736
pubmed: 33244049
Allergy. 2019 Aug;74(8):1445-1456
pubmed: 30835837
Environ Microbiol. 2020 Feb;22(2):564-567
pubmed: 31849163
Mol Biol Evol. 2014 May;31(5):1059-65
pubmed: 24554779
Front Microbiol. 2019 Jun 27;10:1384
pubmed: 31316478
Trends Ecol Evol. 2012 Dec;27(12):705-11
pubmed: 22985943
Front Microbiol. 2017 Sep 08;8:1729
pubmed: 28943873
mBio. 2021 Jan 19;12(1):
pubmed: 33468686
Nat Commun. 2019 Mar 19;10(1):1254
pubmed: 30890706
Science. 2016 Jun 17;352(6292):1392-3
pubmed: 27313024
N Engl J Med. 2016 Aug 4;375(5):411-421
pubmed: 27518660
Mar Pollut Bull. 2019 Aug;145:287-294
pubmed: 31590790
Annu Rev Entomol. 2006;51:91-111
pubmed: 16332205
Appl Environ Microbiol. 2003 Apr;69(4):1875-83
pubmed: 12676659
Int J Environ Res Public Health. 2022 Jun 05;19(11):
pubmed: 35682493
Environ Res. 2019 Oct;177:108608
pubmed: 31377583
Nature. 2020 Aug;584(7821):398-402
pubmed: 32759999
Nat Commun. 2019 Mar 20;10(1):1286
pubmed: 30894548
Biol Lett. 2010 Feb 23;6(1):109-11
pubmed: 19776066
Front Microbiol. 2017 May 15;8:834
pubmed: 28555131
Curr Biol. 2019 Oct 21;29(20):R1094-R1103
pubmed: 31639358
Nat Rev Microbiol. 2012 Dec;10(12):828-40
pubmed: 23154261
Sci Total Environ. 2023 Jan 15;856(Pt 2):159166
pubmed: 36202364
Microorganisms. 2017 Nov 25;5(4):
pubmed: 29186821
Pathogens. 2021 May 17;10(5):
pubmed: 34067889
Curr Opin Biotechnol. 2021 Feb;67:158-165
pubmed: 33596519
Food Microbiol. 2022 Dec;108:104103
pubmed: 36088117
Front Microbiol. 2019 Jul 24;10:1629
pubmed: 31396172
mSystems. 2021 Aug 31;6(4):e0079321
pubmed: 34374562
Nat Rev Microbiol. 2023 Jan;21(1):6-20
pubmed: 35999468
PLoS One. 2021 Jun 16;16(6):e0253133
pubmed: 34133453
ISME J. 2021 Sep;15(9):2748-2762
pubmed: 33782567
PLoS One. 2019 Aug 1;14(8):e0220554
pubmed: 31369600
Trends Ecol Evol. 2015 Aug;30(8):438-40
pubmed: 26126934
ISME J. 2022 Oct;16(10):2295-2304
pubmed: 35778440
Environ Int. 2019 Nov;132:105069
pubmed: 31400602
Commun Biol. 2022 Mar 18;5(1):241
pubmed: 35304890
Front Microbiol. 2014 Mar 20;5:104
pubmed: 24688484
Annu Rev Entomol. 2010;55:247-66
pubmed: 19728837
mSystems. 2022 Aug 30;7(4):e0011822
pubmed: 35762794
Front Microbiol. 2018 Nov 12;9:2708
pubmed: 30483233
Nat Commun. 2021 Sep 30;12(1):5731
pubmed: 34593802
Microbiome. 2014 Nov 17;2:41
pubmed: 25408893
Annu Rev Microbiol. 2005;59:155-89
pubmed: 16153167
Front Microbiol. 2019 Sep 06;10:2091
pubmed: 31555256
Sci Rep. 2022 Jun 2;12(1):9192
pubmed: 35654937
Nat Microbiol. 2019 Jul;4(7):1183-1195
pubmed: 31086312
Lancet Planet Health. 2019 Oct;3(10):e402-e404
pubmed: 31625509
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1326-32
pubmed: 25733885
JAMA Pediatr. 2017 Jul 1;171(7):647-654
pubmed: 28492938
BMC Genomics. 2013 Dec 28;14:928
pubmed: 24373541
Gut Microbes. 2022 Jan-Dec;14(1):2078621
pubmed: 35604764
Front Microbiol. 2015 May 22;6:486
pubmed: 26052316
Cell. 2021 Feb 4;184(3):615-627.e17
pubmed: 33453153
Appl Environ Microbiol. 2001 Jul;67(7):3269-74
pubmed: 11425751
Front Immunol. 2018 Feb 28;9:361
pubmed: 29599768
J Food Prot. 2001 Jun;64(6):845-9
pubmed: 11403136
Nat Ecol Evol. 2020 Aug;4(8):1020-1035
pubmed: 32572221
Curr Biol. 2020 Oct 5;30(19):R1143-R1146
pubmed: 33022257
Chemosphere. 2017 Dec;188:455-464
pubmed: 28898777
Virulence. 2017 Apr 3;8(3):352-358
pubmed: 27736307
Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5
pubmed: 30001516
Appl Microbiol Biotechnol. 2016 Mar;100(5):2083-96
pubmed: 26754820
Front Microbiol. 2022 Jul 04;13:834622
pubmed: 35903477
PLoS One. 2020 May 26;15(5):e0232489
pubmed: 32453749
Microbiol Spectr. 2022 Dec 21;10(6):e0342122
pubmed: 36409096
Nat Rev Microbiol. 2011 Apr;9(4):244-53
pubmed: 21407241
Proc Biol Sci. 2002 Jul 7;269(1498):1397-403
pubmed: 12079664
Nat Rev Microbiol. 2012 Sep;10(9):641-54
pubmed: 22842661
Sci Rep. 2013;3:1413
pubmed: 23475210
Trends Microbiol. 2021 Aug;29(8):667-685
pubmed: 33551269
Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):5-6
pubmed: 24309378
Sci Total Environ. 2022 Sep 10;838(Pt 2):156087
pubmed: 35605852
Clin Microbiol Rev. 2007 Jul;20(3):459-77, table of contents
pubmed: 17630335
Front Microbiol. 2016 Feb 16;7:16
pubmed: 26909068
Microbiome. 2020 Jun 30;8(1):103
pubmed: 32605663
J Food Prot. 2012 Mar;75(3):472-9
pubmed: 22410220
Sci Total Environ. 2020 Apr 15;713:136707
pubmed: 32019041
Sci Total Environ. 2019 May 10;664:927-937
pubmed: 30769316
Microb Biotechnol. 2022 Sep;15(9):2379-2390
pubmed: 35593114
Nat Rev Microbiol. 2020 Nov;18(11):607-621
pubmed: 32788714
Microorganisms. 2021 Oct 09;9(10):
pubmed: 34683443
Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12498-503
pubmed: 25114252
Front Microbiol. 2022 Nov 11;13:1032495
pubmed: 36439813
New Phytol. 2022 Jun;234(6):1951-1959
pubmed: 35118660
Microbiome. 2019 Jan 29;7(1):13
pubmed: 30696492
Trends Microbiol. 2015 Jun;23(6):354-66
pubmed: 25840765
Euro Surveill. 2022 Nov;27(44):
pubmed: 36330821
FEMS Microbiol Rev. 2013 Sep;37(5):699-735
pubmed: 23692388
BMC Microbiol. 2019 Jun 25;19(1):143
pubmed: 31238873
Cell. 2015 Mar 26;161(1):49-55
pubmed: 25815984
Gut Microbes. 2022 Jan-Dec;14(1):2118811
pubmed: 36093611
New Phytol. 2018 Nov;220(3):750-759
pubmed: 28960308
Nat Commun. 2020 Feb 6;11(1):754
pubmed: 32029713
Cell Metab. 2021 Jun 1;33(6):1098-1110
pubmed: 34077717
Clin Microbiol Infect. 2012 Jul;18 Suppl 4:12-5
pubmed: 22647041
PLoS One. 2014 Jun 16;9(6):e100112
pubmed: 24932485
Sci Total Environ. 2020 Jul 20;727:138708
pubmed: 32334231
Int J Environ Res Public Health. 2022 Jul 01;19(13):
pubmed: 35805776
J Food Prot. 2018 Feb;81(2):218-225
pubmed: 29320234
Microbiol Spectr. 2022 Dec 21;10(6):e0305022
pubmed: 36374107
Cell. 2020 Oct 15;183(2):324-334.e5
pubmed: 33007265
ISME J. 2015 May;9(5):1105-18
pubmed: 25333463
Appl Environ Microbiol. 2002 Aug;68(8):4015-24
pubmed: 12147503
Microbiol Mol Biol Rev. 2015 Sep;79(3):293-320
pubmed: 26136581
Curr Opin Biotechnol. 2017 Apr;44:94-102
pubmed: 27998788
Front Microbiol. 2019 Jul 26;10:1713
pubmed: 31404169
Animal. 2021 Jan;15(1):100014
pubmed: 33516034
Environ Health Perspect. 2015 Apr;123(4):337-43
pubmed: 25633846