Characterization of the arbuscular mycorrhizal fungal community associated with rosewood in threatened Miombo forests.
Arbuscular mycorrhizal fungal community
Land use
Miombo forests
Pterocarpus tinctorius Welw.
Soil properties
Journal
Mycorrhiza
ISSN: 1432-1890
Titre abrégé: Mycorrhiza
Pays: Germany
ID NLM: 100955036
Informations de publication
Date de publication:
Jul 2023
Jul 2023
Historique:
received:
13
02
2023
accepted:
07
06
2023
medline:
22
8
2023
pubmed:
27
6
2023
entrez:
27
6
2023
Statut:
ppublish
Résumé
Understanding the dynamics of arbuscular mycorrhizal fungi (AMF) in response to land use change is important for the restoration of degraded forests. Here, we investigated the AMF community composition in the roots of Pterocarpus tinctorius sampled from agricultural and forest fallow soils rich in aluminum and iron. By sequencing the large subunit region of the rRNA gene, we identified a total of 30 operational taxonomic units (OTUs) in 33 root samples. These OTUs belonged to the genera Rhizophagus, Dominikia, Glomus, Sclerocystis, and Scutellospora. The majority of these OTUs did not closely match any known AMF species. We found that AMF species richness was significantly influenced by soil properties and overall tree density. Acidic soils with high levels of aluminum and iron had a low mean AMF species richness of 3.2. Indicator species analyses revealed several AMF OTUs associated with base saturation (4 OTUs), high aluminum (3 OTUs), and iron (2 OTUs). OTUs positively correlated with acidity (1 OTU), iron, and available phosphorus (2 OTUs) were assigned to the genus Rhizophagus, suggesting their tolerance to aluminum and iron. The results highlight the potential of leguminous trees in tropical dry forests as a reservoir of unknown AMF species. The baseline data obtained in this study opens new avenues for future studies, including the use of indigenous AMF-based biofertilizers to implement ecological revegetation strategies and improve land use.
Identifiants
pubmed: 37368151
doi: 10.1007/s00572-023-01115-7
pii: 10.1007/s00572-023-01115-7
doi:
Substances chimiques
Aluminum
CPD4NFA903
Soil
0
Iron
E1UOL152H7
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
277-288Informations de copyright
© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
Références
Altschul SF, Gish W, Miller W et al (1990) Basic local alignment search tool. J Mol Biol 215:403–410. https://doi.org/10.1016/s0022-2836(05)80360-2
doi: 10.1016/s0022-2836(05)80360-2
pubmed: 2231712
Asmelash F, Bekele T, Birhane E (2016) The potential role of arbuscular mycorrhizal fungi in the restoration of degraded lands. Front Microbiol 7:1095. https://doi.org/10.3389/fmicb.2016.01095
doi: 10.3389/fmicb.2016.01095
pubmed: 27507960
pmcid: 4960231
Bâ A, Dalpé Y, Guissou T (1996) Les glomales d’Acacia holosericea et d’Acacia mangium. Bois & Forêts des tropiques 250:5–18. https://doi.org/10.19182/bft1996.250.a19862
Bates D, Mächler M, Bolker B, Walker S (2015) Fitting linear mixed-effects models using lme4. J Stat Softw 67. https://doi.org/10.18637/jss.v067.i01
Belay Z, Vestberg M, Assefa F (2013) Diversity and abundance of arbuscular mycorrhizal fungi associated with acacia trees from different land use systems in Ethiopia. Afr J Microbiol Res 7:5503–5515. https://doi.org/10.5897/ajmr2013.6115
doi: 10.5897/ajmr2013.6115
Bento RA, Saggin-Júnior OJ, Pitard RM et al (2012) Selection of leguminous trees associated with symbiont microorganisms for phytoremediation of petroleum-contaminated soil. Water Air Soil Pollut 223:5659–5671. https://doi.org/10.1007/s11270-012-1305-3
doi: 10.1007/s11270-012-1305-3
Błaszkowski J, Chwat G, Góralska A et al (2015) Two new genera, Dominikia and Kamienskia, and D. disticha sp. nov. in Glomeromycota. Nova Hedwigia 100:225–238. https://doi.org/10.1127/nova_hedwigia/2014/0216
doi: 10.1127/nova_hedwigia/2014/0216
Bouyoucos GJ (1962) Hydrometer method improved for making particle size analyses of soils1. Agron J 54:464–465. https://doi.org/10.2134/agronj1962.00021962005400050028x
doi: 10.2134/agronj1962.00021962005400050028x
Bray RH, Kurtz LT (1945) Determination of total, organic, and available forms of phosphorus in soils. Soil Sci 59:39–46. https://doi.org/10.1097/00010694-194501000-00006
doi: 10.1097/00010694-194501000-00006
Brundrett MC, Tedersoo L (2018) Evolutionary history of mycorrhizal symbioses and global host plant diversity. New Phytol 220:1108–1115. https://doi.org/10.1111/nph.14976
doi: 10.1111/nph.14976
pubmed: 29355963
Castro D, Urzúa J, Rodriguez-Malebran M et al (2017) Woody leguminous trees: new uses for sustainable development of drylands. J Sustain Forest 36:764–786. https://doi.org/10.1080/10549811.2017.1359098
doi: 10.1080/10549811.2017.1359098
Cerutti PO, Gumbo DJ, Moombe KB et al (2018) Mukula (rosewood) trade between China and Zambia. CIFOR Infobrief 215. https://doi.org/10.17528/cifor/006880
Chen H (2018) VennDiagram: generate high-resolution Venn and Euler plots. Version R package version 1.6.20. https://CRAN.R-project.org/package=VennDiagram
Corporation C (2016) General guidelines to assist with microwave digestion method development
Crossay T, Cilia A, Cavaloc Y et al (2018) Four new species of arbuscular mycorrhizal fungi (Glomeromycota) associated with endemic plants from ultramafic soils of New Caledonia. Mycol Prog 17:729–744. https://doi.org/10.1007/s11557-018-1386-5
doi: 10.1007/s11557-018-1386-5
Dalpé Y, Diop TA, Plenchette C, Gueye M (2000) Glomales species associated with surface and deep rhizosphere of Faidherbia albida in Senegal. Mycorrhiza 10:125–129. https://doi.org/10.1007/s005720000069
doi: 10.1007/s005720000069
Dormann CF, Gruber B, Fruend J (2008) Introducing the bipartite package: analyzing ecological networks. R News 8:8–11
Echevarria G (2017) Agromining: farming for metals, extracting unconventional resources using plants. Mineral Resour Rev 135–156. https://doi.org/10.1007/978-3-319-61899-9_8
FAO (2006) World reference base for soil resources 2006. World soil resources reports No. 103. Food and Agriculture Organization of the United Nations, Rome
Gaidashova S, Nsabimana A, Karamura D et al (2012) Mycorrhizal colonization of major banana genotypes in six East African environments. Agric Ecosyst Environ 157:40–46. https://doi.org/10.1016/j.agee.2012.01.005
doi: 10.1016/j.agee.2012.01.005
Geoffroy A, Sanguin H, Galiana A, Bâ A (2017) Molecular characterization of arbuscular mycorrhizal fungi in an agroforestry system reveals the predominance of Funneliformis spp. associated with Colocasia esculenta and Pterocarpus officinalis adult trees and seedlings. Front Microbiol 8:1426. https://doi.org/10.3389/fmicb.2017.01426
Gianinazzi S, Gollotte A, Binet M-N et al (2010) Agroecology: the key role of arbuscular mycorrhizas in ecosystem services. Mycorrhiza 20:519–530. https://doi.org/10.1007/s00572-010-0333-3
doi: 10.1007/s00572-010-0333-3
pubmed: 20697748
Gollotte A, van Tuinen D, Atkinson D (2003) Diversity of arbuscular mycorrhizal fungi colonizing roots of the grass species Agrostis capillaris and Lolium perenne in a field experiment. Mycorrhiza 14:111–117. https://doi.org/10.1007/s00572-003-0244-7
doi: 10.1007/s00572-003-0244-7
pubmed: 12768382
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Harrell FE (2018) Hmisc: Harrell miscellaneous. Version R package version 4.1–1. https://hbiostat.org/R/Hmisc/
Hart MM, Reader RJ (2002) Taxonomic basis for variation in the colonization strategy of arbuscular mycorrhizal fungi. New Phytol 153:335–344. https://doi.org/10.1046/j.0028-646x.2001.00312.x
doi: 10.1046/j.0028-646x.2001.00312.x
Hogberg P, Piearce GD (1986) Mycorrhizas in Zambian trees in relation to host taxonomy, vegetation type and successional patterns. J Ecol 74:775. https://doi.org/10.2307/2260397
doi: 10.2307/2260397
Holste EK, Holl KD, Zahawi RA, Kobe RK (2016) Reduced aboveground tree growth associated with higher arbuscular mycorrhizal fungal diversity in tropical forest restoration. Ecol Evol 6:7253–7262. https://doi.org/10.1002/ece3.2487
doi: 10.1002/ece3.2487
pubmed: 28725395
pmcid: 5513279
Hothorn T, Bretz F, Westfall P (2008) Simultaneous inference in general parametric models. Biometrical J 50:346–363. https://doi.org/10.1002/bimj.200810425
doi: 10.1002/bimj.200810425
Janos DP, Sahley CT, Emmons LH (1995) Rodent dispersal of vesicular-arbuscular mycorrhizal fungi in Amazonian Peru. Ecology 76:1852–1858. https://doi.org/10.2307/1940717
doi: 10.2307/1940717
Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. https://doi.org/10.1093/molbev/mst010
doi: 10.1093/molbev/mst010
pubmed: 23329690
pmcid: 3603318
Khade SW, Rodrigues BF (2003) Occurrence of arbuscular mycorrhizal fungi in tree species from Western Ghats of Goa. India J Trop for Sci 15(2):320–331
Kiruki HM, van der Zanden EH, Gikuma-Njuru P, Verburg PH (2017) The effect of charcoal production and other land uses on diversity, structure and regeneration of woodlands in a semi-arid area in Kenya. Forest Ecol Manag 391:282–295. https://doi.org/10.1016/j.foreco.2017.02.030
doi: 10.1016/j.foreco.2017.02.030
Krüger M, Krüger C, Walker C et al (2012) Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytol 193:970–984. https://doi.org/10.1111/j.1469-8137.2011.03962.x
doi: 10.1111/j.1469-8137.2011.03962.x
pubmed: 22150759
Lebrazi S, Fikri-Benbrahim K (2022) Advances in legumes for sustainable intensification. 461–482. https://doi.org/10.1016/b978-0-323-85797-0.00004-5
Lekberg Y, Gibbons SM, Rosendahl S, Ramsey PW (2013) Severe plant invasions can increase mycorrhizal fungal abundance and diversity. ISME J 7:1424–1433. https://doi.org/10.1038/ismej.2013.41
doi: 10.1038/ismej.2013.41
pubmed: 23486251
pmcid: 3695300
Luginbuehl LH, Menard GN, Kurup S et al (2017) Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant. Sci New York N Y 356:1175–1178. https://doi.org/10.1126/science.aan0081
doi: 10.1126/science.aan0081
Malaisse F (1997) Se nourrir en forêt claire africaine. Les Presses Agronomiques de Gembloux, Approche écologique et nutritionnelle
Manaut N, Sanguin H, Ouahmane L et al (2015) Potentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments. Ecol Eng 79:113–119. https://doi.org/10.1016/j.ecoleng.2015.03.007
doi: 10.1016/j.ecoleng.2015.03.007
Martínez-García LB, Richardson SJ, Tylianakis JM et al (2015) Host identity is a dominant driver of mycorrhizal fungal community composition during ecosystem development. New Phytol 205:1565–1576. https://doi.org/10.1111/nph.13226
doi: 10.1111/nph.13226
pubmed: 25640965
Mathimaran N, Ruh R, Jama B et al (2007) Impact of agricultural management on arbuscular mycorrhizal fungal communities in Kenyan ferralsol. Agric Ecosyst Environ 119:22–32. https://doi.org/10.1016/j.agee.2006.06.004
doi: 10.1016/j.agee.2006.06.004
Mensah JA, Koch AM, Antunes PM et al (2015) High functional diversity within species of arbuscular mycorrhizal fungi is associated with differences in phosphate and nitrogen uptake and fungal phosphate metabolism. Mycorrhiza 25:533–546. https://doi.org/10.1007/s00572-015-0631-x
doi: 10.1007/s00572-015-0631-x
pubmed: 25708401
Mgumia FH (2017) Traditional uses of miombo woodland tree species in Sikonge District, Tanzania. Int J Nat Resour Ecol Management 2:69. https://doi.org/10.11648/j.ijnrem.20170204.11
Moora M, Davison J, Öpik M et al (2014) Anthropogenic land use shapes the composition and phylogenetic structure of soil arbuscular mycorrhizal fungal communities. FEMS Microbiol Ecol 90:609–621. https://doi.org/10.1111/1574-6941.12420
doi: 10.1111/1574-6941.12420
pubmed: 25187481
Mukenza MM, Muteya HK, Nghonda D-DN et al (2022) Uncontrolled exploitation of Pterocarpus tinctorius Welw. and associated landscape dynamics in the Kasenga territory: case of the rural area of Kasomeno (DR Congo). Land 11:1541. https://doi.org/10.3390/land11091541
Ngongo M, Ranst EV, Baert G et al (2009) Guide des sols en République Démocratique du Congo, tome I: étude et gestion. Ecole Technique Salama-Don Bosco
Oehl F, Laczko E, Bogenrieder A et al (2010) Soil type and land use intensity determine the composition of arbuscular mycorrhizal fungal communities. Soil Biol Biochem 42:724–738. https://doi.org/10.1016/j.soilbio.2010.01.006
doi: 10.1016/j.soilbio.2010.01.006
Oksanen J, Blanchet FG, Friendly M et al (2019) vegan: community ecology package. R package version 2.5–6. Version 2.5–6. https://CRAN.R-project.org/package=vegan
Öpik M, Vanatoa A, Vanatoa E et al (2010) The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytol 188:223–241. https://doi.org/10.1111/j.1469-8137.2010.03334.x
doi: 10.1111/j.1469-8137.2010.03334.x
pubmed: 20561207
Ouellette M-H (2011) MVPARTwrap: additional functionalities for package mvpart. Version 0.1–9. https://cran.r-project.org/src/contrib/Archive/MVPARTwrap/
Peel MC, Finlayson BL, McMahon TA (2007) Updated world map of the Köppen-Geiger climate classification. Hydrol Earth Syst Sc 11:1633–1644. https://doi.org/10.5194/hess-11-1633-2007
doi: 10.5194/hess-11-1633-2007
Procter AC, Ellis JC, Fay PA et al (2014) Fungal community responses to past and future atmospheric CO2 differ by soil type. Appl Environ Microb 80:7364–7377. https://doi.org/10.1128/aem.02083-14
doi: 10.1128/aem.02083-14
R Core Team (2018) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org.L
Rich MK, Vigneron N, Libourel C et al (2021) Lipid exchanges drove the evolution of mutualism during plant terrestrialization. Science 372:864–868. https://doi.org/10.1126/science.abg0929
doi: 10.1126/science.abg0929
pubmed: 34016782
Roberts DW (2019) labdsv: ordination and multivariate analysis for ecology. Version 2.0–1
Rodríguez-Echeverría S, Teixeira H, Correia M et al (2017) Arbuscular mycorrhizal fungi communities from tropical Africa reveal strong ecological structure. New Phytol 213:380–390. https://doi.org/10.1111/nph.14122
doi: 10.1111/nph.14122
pubmed: 27560189
Sene G, Samba-Mbaye R, Thiao M et al (2012a) The abundance and diversity of legume-nodulating rhizobia and arbuscular mycorrhizal fungal communities in soil samples from deforested and man-made forest systems in a semiarid Sahel region in Senegal. Eur J Soil Biol 52:30–40. https://doi.org/10.1016/j.ejsobi.2012.05.005
doi: 10.1016/j.ejsobi.2012.05.005
Sene G, Thiao M, Manga A et al (2012b) Arbuscular mycorrhizal soil infectivity and spores distribution across plantations of tropical, subtropical and exotic tree species: a case study from the forest reserve of Bandia, Senegal. Afr J Ecol 50:218–232. https://doi.org/10.1111/j.1365-2028.2011.01315.x
doi: 10.1111/j.1365-2028.2011.01315.x
Sene G, Thiao M, Samba-Mbaye R et al (2013) The abundance and diversity of legume-nodulating rhizobia in 28-year-old plantations of tropical, subtropical, and exotic tree species: a case study from the forest reserve of Bandia, Senegal. Microbial Ecol 65:128–144. https://doi.org/10.1007/s00248-012-0094-y
doi: 10.1007/s00248-012-0094-y
Spruyt A, Buck MT, Mia A, Straker CJ (2014) Arbuscular mycorrhiza (AM) status of rehabilitation plants of mine wastes in South Africa and determination of AM fungal diversity by analysis of the small subunit rRNA gene sequences. S Afr J Bot 94:231–237. https://doi.org/10.1016/j.sajb.2014.07.006
doi: 10.1016/j.sajb.2014.07.006
Stefani F, Bencherif K, Sabourin S et al (2020a) Taxonomic assignment of arbuscular mycorrhizal fungi in an 18S metagenomic dataset: a case study with saltcedar (Tamarix aphylla). Mycorrhiza. https://doi.org/10.1007/s00572-020-00946-y
Straker CJ, Hilditch AJ, Rey MEC (2010) Arbuscular mycorrhizal fungi associated with cassava (Manihot esculenta Crantz) in South Africa. S Afr J Bot 76:102–111. https://doi.org/10.1016/j.sajb.2009.09.005
doi: 10.1016/j.sajb.2009.09.005
Syampungani S, Geldenhuys CJ, Chirwa PW (2016) Regeneration dynamics of Miombo woodland in response to different anthropogenic disturbances: forest characterisation for sustainable management. Agroforest Syst 90:563–576. https://doi.org/10.1007/s10457-015-9841-7
Tapwal A, Kumar R, Pandey S (2013) Diversity and frequency of macrofungi associated with wet ever green tropical forest in Assam, India. Biodiversitas 14(2):73–78. https://doi.org/10.13057/biodiv/d140204
Timberlake J, Sawadogo ECL, Sawadogo L (2010) Distribution and characteristics of African dry forests and woodlands. In: The dry forests and woodlands of Africa
van der Heijden MGA, Bardgett RD, van Straalen NM (2008) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11:296–310. https://doi.org/10.1111/j.1461-0248.2007.01139.x
doi: 10.1111/j.1461-0248.2007.01139.x
pubmed: 18047587
Van Tuinen D, Zhao B, Gianinazzi-Pearson V (1998) Mycorrhiza manual. In: Varma A (ed). Springer-Verlag, Berlin Heidelberg New York, pp 387–400
Wang J, Wang GG, Zhang B et al (2019) Arbuscular mycorrhizal fungi associated with tree species in a planted forest of Eastern China. Forests 10:424. https://doi.org/10.3390/f10050424
doi: 10.3390/f10050424
Wei T, Simko V (2017) R package “corrplot”: visualization of a correlation matrix. Version 0.84. https://github.com/taiyun/corrplot
Yonli HH, Sene G, Sanon KB, Dianda M, Khasa DP (2022) Senegalia senegal (L.) Britton response to microbial and manure amendments for the rehabilitation of waste rock dumps in the Essakane gold mining site, Burkina Faso. Front Environ Sci 10:803009. https://doi.org/10.3389/fenvs.2022.803009
Zeileis A, Hothorn T (2002) Diagnostic checking in regression relationships. R News 2(3):7–10