External Validation and Retraining of DeepBleed: The First Open-Source 3D Deep Learning Network for the Segmentation of Spontaneous Intracerebral and Intraventricular Hemorrhage.

automated segmentation deep learning external validation intracerebral hemorrhage multicenter

Journal

Journal of clinical medicine
ISSN: 2077-0383
Titre abrégé: J Clin Med
Pays: Switzerland
ID NLM: 101606588

Informations de publication

Date de publication:
12 Jun 2023
Historique:
received: 10 05 2023
revised: 03 06 2023
accepted: 07 06 2023
medline: 28 6 2023
pubmed: 28 6 2023
entrez: 28 6 2023
Statut: epublish

Résumé

The objective of this study was to assess the performance of the first publicly available automated 3D segmentation for spontaneous intracerebral hemorrhage (ICH) based on a 3D neural network before and after retraining. We performed an independent validation of this model using a multicenter retrospective cohort. Performance metrics were evaluated using the dice score (DSC), sensitivity, and positive predictive values (PPV). We retrained the original model (OM) and assessed the performance via an external validation design. A multivariate linear regression model was used to identify independent variables associated with the model's performance. Agreements in volumetric measurements and segmentation were evaluated using Pearson's correlation coefficients (r) and intraclass correlation coefficients (ICC), respectively. With 1040 patients, the OM had a median DSC, sensitivity, and PPV of 0.84, 0.79, and 0.93, compared to thoseo f 0.83, 0.80, and 0.91 in the retrained model (RM). However, the median DSC for infratentorial ICH was relatively low and improved significantly after retraining, at The model demonstrated good generalization in an external validation cohort. Location-specific variances improved significantly after retraining. External validation and retraining are important steps to consider before applying deep learning models in new clinical settings.

Sections du résumé

BACKGROUND BACKGROUND
The objective of this study was to assess the performance of the first publicly available automated 3D segmentation for spontaneous intracerebral hemorrhage (ICH) based on a 3D neural network before and after retraining.
METHODS METHODS
We performed an independent validation of this model using a multicenter retrospective cohort. Performance metrics were evaluated using the dice score (DSC), sensitivity, and positive predictive values (PPV). We retrained the original model (OM) and assessed the performance via an external validation design. A multivariate linear regression model was used to identify independent variables associated with the model's performance. Agreements in volumetric measurements and segmentation were evaluated using Pearson's correlation coefficients (r) and intraclass correlation coefficients (ICC), respectively. With 1040 patients, the OM had a median DSC, sensitivity, and PPV of 0.84, 0.79, and 0.93, compared to thoseo f 0.83, 0.80, and 0.91 in the retrained model (RM). However, the median DSC for infratentorial ICH was relatively low and improved significantly after retraining, at
CONCLUSION CONCLUSIONS
The model demonstrated good generalization in an external validation cohort. Location-specific variances improved significantly after retraining. External validation and retraining are important steps to consider before applying deep learning models in new clinical settings.

Identifiants

pubmed: 37373699
pii: jcm12124005
doi: 10.3390/jcm12124005
pmc: PMC10299035
pii:
doi:

Types de publication

Journal Article

Langues

eng

Références

Lancet. 2017 Feb 11;389(10069):603-611
pubmed: 28081952
Stroke. 2019 Jun;50(6):1392-1402
pubmed: 31092170
Stroke. 2000 Jan;31(1):123-7
pubmed: 10625726
Neuroimage. 2012 Jul 16;61(4):957-65
pubmed: 22440645
Nature. 2020 Sep;585(7825):357-362
pubmed: 32939066
BMC Med Imaging. 2015 Aug 12;15:29
pubmed: 26263899
Stroke. 2019 May;50(5):1257-1259
pubmed: 30890109
Radiol Artif Intell. 2022 May 04;4(3):e210064
pubmed: 35652114
Radiology. 2019 Jun;291(3):677-686
pubmed: 30912722
Neuroimage Clin. 2017 Feb 15;14:379-390
pubmed: 28275541
Lancet. 2019 Mar 9;393(10175):1021-1032
pubmed: 30739747
BMC Med Imaging. 2021 Aug 13;21(1):125
pubmed: 34388981
Lancet. 1992 Mar 14;339(8794):656-8
pubmed: 1347346
Lancet Neurol. 2016 Nov;15(12):1228-1237
pubmed: 27751554
Lancet. 2009 May 9;373(9675):1632-44
pubmed: 19427958
Eur Radiol. 2021 Jul;31(7):5012-5020
pubmed: 33409788
Stroke. 2015 Jul;46(7):2032-60
pubmed: 26022637
J Chiropr Med. 2016 Jun;15(2):155-63
pubmed: 27330520
Lancet Neurol. 2008 May;7(5):391-9
pubmed: 18396107
Stroke. 2019 Jun;50(6):1626-1633
pubmed: 31043154
Stroke. 2016 Nov;47(11):2776-2782
pubmed: 27703089
Hum Brain Mapp. 2002 Nov;17(3):143-55
pubmed: 12391568
Stroke. 2015 Sep;46(9):2470-6
pubmed: 26243227
Nat Methods. 2021 Feb;18(2):203-211
pubmed: 33288961
Stroke. 2020 Feb;51(2):648-651
pubmed: 31805845
Neuroinformatics. 2021 Jul;19(3):403-415
pubmed: 32980970
JAMA Neurol. 2013 Aug;70(8):988-94
pubmed: 23733000
Stroke. 2022 Jan;53(1):167-176
pubmed: 34601899
J Neurol Sci. 2019 Mar 15;398:54-66
pubmed: 30682522
Neuroimage. 2006 Jul 1;31(3):1116-28
pubmed: 16545965
Stroke. 2001 Apr;32(4):891-7
pubmed: 11283388
Stroke. 2012 Jan;43(1):67-71
pubmed: 21980211
Front Comput Neurosci. 2019 Dec 20;13:84
pubmed: 31920609
Lancet Neurol. 2021 Oct;20(10):795-820
pubmed: 34487721
Neurology. 2008 Mar 11;70(11):848-52
pubmed: 18332342
Cerebrovasc Dis Extra. 2019;9(3):148-154
pubmed: 31838472
Acta Neurochir Suppl. 2008;105:147-51
pubmed: 19066101

Auteurs

Haoyin Cao (H)

Department of Radiology, Charité-Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, Charitéplatz 1, 10117 Berlin, Germany.

Andrea Morotti (A)

Neurology Unit, Department of Neurological Sciences and Vision, ASST-Spedali Civili, 25123 Brescia, Italy.

Federico Mazzacane (F)

Department of Brain and Behavioral Sciences, University of Pavia, 27100 Pavia, Italy.
U.C. Malattie Cerebrovascolari e Stroke Unit, IRCCS Fondazione Mondino, 27100 Pavia, Italy.

Dmitriy Desser (D)

Department of Neuroradiology, Charité School of Medicine and University Hospital Berlin, 10117 Berlin, Germany.

Frieder Schlunk (F)

Department of Neuroradiology, Charité School of Medicine and University Hospital Berlin, 10117 Berlin, Germany.

Christopher Güttler (C)

Department of Neuroradiology, Charité School of Medicine and University Hospital Berlin, 10117 Berlin, Germany.

Helge Kniep (H)

Department of Diagnostic and Interventional Neuroradiology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany.

Tobias Penzkofer (T)

Department of Radiology, Charité-Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, Charitéplatz 1, 10117 Berlin, Germany.
Berlin Institute of Health (BIH), BIH Biomedical Innovation Academy, 10178 Berlin, Germany.

Jens Fiehler (J)

Department of Diagnostic and Interventional Neuroradiology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany.

Uta Hanning (U)

Department of Diagnostic and Interventional Neuroradiology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany.

Andrea Dell'Orco (A)

Department of Neuroradiology, Charité School of Medicine and University Hospital Berlin, 10117 Berlin, Germany.

Jawed Nawabi (J)

Department of Radiology, Charité-Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, Charitéplatz 1, 10117 Berlin, Germany.
Department of Neuroradiology, Charité School of Medicine and University Hospital Berlin, 10117 Berlin, Germany.
Berlin Institute of Health (BIH), BIH Biomedical Innovation Academy, 10178 Berlin, Germany.

Classifications MeSH