Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.


Journal

Nature genetics
ISSN: 1546-1718
Titre abrégé: Nat Genet
Pays: United States
ID NLM: 9216904

Informations de publication

Date de publication:
07 2023
Historique:
received: 17 03 2021
accepted: 10 05 2023
medline: 13 7 2023
pubmed: 30 6 2023
entrez: 29 6 2023
Statut: ppublish

Résumé

Hereditary congenital facial paresis type 1 (HCFP1) is an autosomal dominant disorder of absent or limited facial movement that maps to chromosome 3q21-q22 and is hypothesized to result from facial branchial motor neuron (FBMN) maldevelopment. In the present study, we report that HCFP1 results from heterozygous duplications within a neuron-specific GATA2 regulatory region that includes two enhancers and one silencer, and from noncoding single-nucleotide variants (SNVs) within the silencer. Some SNVs impair binding of NR2F1 to the silencer in vitro and in vivo and attenuate in vivo enhancer reporter expression in FBMNs. Gata2 and its effector Gata3 are essential for inner-ear efferent neuron (IEE) but not FBMN development. A humanized HCFP1 mouse model extends Gata2 expression, favors the formation of IEEs over FBMNs and is rescued by conditional loss of Gata3. These findings highlight the importance of temporal gene regulation in development and of noncoding variation in rare mendelian disease.

Identifiants

pubmed: 37386251
doi: 10.1038/s41588-023-01424-9
pii: 10.1038/s41588-023-01424-9
pmc: PMC10335940
doi:

Substances chimiques

GATA2 Transcription Factor 0
Gata2 protein, mouse 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

1149-1163

Subventions

Organisme : NHGRI NIH HHS
ID : R01 HG003988
Pays : United States
Organisme : NICHD NIH HHS
ID : U01 HD079068
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR004419
Pays : United States
Organisme : NICHD NIH HHS
ID : U54 HD090255
Pays : United States
Organisme : Intramural NIH HHS
ID : ZIC MH002961
Pays : United States

Informations de copyright

© 2023. The Author(s).

Références

Hum Mol Genet. 2018 Aug 1;27(R2):R219-R227
pubmed: 29726898
Front Cell Dev Biol. 2019 Apr 24;7:59
pubmed: 31069224
Hum Mol Genet. 2003 Jul 15;12(14):1725-35
pubmed: 12837695
Neurology. 2005 Feb 22;64(4):649-53
pubmed: 15728286
Dev Biol. 1999 Jun 15;210(2):305-21
pubmed: 10357893
Anat Rec A Discov Mol Cell Evol Biol. 2005 Nov;287(1):1067-79
pubmed: 16200649
Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17921-6
pubmed: 24127591
J Anat. 1982 Aug;135(Pt 1):147-54
pubmed: 7130049
Nat Genet. 2022 Nov;54(11):1615-1620
pubmed: 36333503
Nat Methods. 2021 Nov;18(11):1333-1341
pubmed: 34725479
Hum Mol Genet. 1996 Sep;5(9):1367-71
pubmed: 8872479
Cells. 2019 Dec 31;9(1):
pubmed: 31906104
Nucleic Acids Res. 2007;35(6):2013-25
pubmed: 17341461
Nat Genet. 2017 Sep;49(9):1408-1413
pubmed: 28740262
Eur J Hum Genet. 2006 Dec;14(12):1306-12
pubmed: 16912702
Nat Rev Neurosci. 2007 Nov;8(11):859-71
pubmed: 17948031
Cell Stem Cell. 2012 Nov 2;11(5):633-48
pubmed: 22981823
PLoS Biol. 2020 May 18;18(5):e3000719
pubmed: 32421711
Nat Genet. 2006 Jan;38(1):27-37
pubmed: 16311598
Development. 2009 Jan;136(2):253-62
pubmed: 19088086
Science. 2013 Oct 11;342(6155):253-7
pubmed: 24115442
Cancer Res. 2012 Jun 1;72(11):2844-54
pubmed: 22552285
J Clin Invest. 2011 Jun;121(6):2413-21
pubmed: 21606595
Nature. 1996 Dec 19-26;384(6610):630-4
pubmed: 8967950
Nature. 2020 May;581(7809):434-443
pubmed: 32461654
Brain Behav Evol. 2014;83(2):150-61
pubmed: 24776995
Brain Res. 2019 Feb 15;1705:75-94
pubmed: 29709504
Bioinformatics. 2009 Aug 1;25(15):1961-2
pubmed: 19435744
Genome Res. 2012 Jan;22(1):9-24
pubmed: 22090374
Cell. 2020 Mar 19;180(6):1262-1271.e15
pubmed: 32169219
Steroids. 2019 Jan;141:63-69
pubmed: 30481528
Cold Spring Harb Mol Case Stud. 2017 Nov 21;3(6):
pubmed: 28963436
Cell. 1996 Jan 26;84(2):309-20
pubmed: 8565076
Genes Dev. 1997 Aug 1;11(15):1925-37
pubmed: 9271116
Am J Med Genet A. 2009 May;149A(5):931-8
pubmed: 19353646
BMC Neurosci. 2015 Jul 09;16:39
pubmed: 26156498
Mol Cell Biol. 2004 Dec;24(23):10263-76
pubmed: 15542836
Neuron. 2007 Nov 21;56(4):604-20
pubmed: 18031680
Dev Biol. 2003 Aug 1;260(1):46-57
pubmed: 12885554
Cell. 2021 Jun 24;184(13):3573-3587.e29
pubmed: 34062119
Development. 2007 May;134(9):1703-12
pubmed: 17395646
PLoS Genet. 2009 Jan;5(1):e1000327
pubmed: 19180184
Development. 2006 Dec;133(24):4945-55
pubmed: 17119020
Cell Rep. 2019 Oct 8;29(2):437-452.e4
pubmed: 31597102
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W280-6
pubmed: 15215395
J Vis Exp. 2019 Nov 12;(153):
pubmed: 31789317
Mol Cell. 2013 Oct 10;52(1):25-36
pubmed: 24076218
J Clin Invest. 2012 Oct;122(10):3692-704
pubmed: 22996659
Development. 1999 Dec;126(23):5523-31
pubmed: 10556076
J Clin Invest. 2019 Mar 1;129(3):1180-1192
pubmed: 30620726
Cell Rep. 2017 Aug 8;20(6):1396-1408
pubmed: 28793263
J Comp Neurol. 2001 Jan 22;429(4):615-30
pubmed: 11135239
Cell. 2016 Jul 28;166(3):538-554
pubmed: 27471964
Am J Hum Genet. 2009 Apr;84(4):483-92
pubmed: 19327734
Nat Biotechnol. 2021 Jul;39(7):825-835
pubmed: 33846645
Bioinformatics. 2016 Apr 15;32(8):1220-2
pubmed: 26647377
Nat Genet. 2002 Jan;30(1):97-101
pubmed: 11731797
Nat Genet. 2009 Mar;41(3):359-64
pubmed: 19234473
Hum Mol Genet. 2016 Oct 1;25(R2):R157-R165
pubmed: 27354350
Nature. 2012 Sep 6;489(7414):57-74
pubmed: 22955616
Methods Mol Biol. 2022;2403:147-186
pubmed: 34913122
J Biol Chem. 2001 Jul 27;276(30):28029-36
pubmed: 11382775
Genome Res. 2007 Nov;17(11):1665-74
pubmed: 17921354
Dev Neurobiol. 2015 Jul;75(7):721-37
pubmed: 25369423
Development. 2007 Jan;134(2):261-72
pubmed: 17151017
Nature. 1994 Sep 15;371(6494):221-6
pubmed: 8078582
Am J Hum Genet. 2014 Apr 3;94(4):574-85
pubmed: 24702954
Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735
pubmed: 30462313
Cell. 2007 Dec 28;131(7):1235-47
pubmed: 18160035
Nature. 2014 Nov 20;515(7527):371-375
pubmed: 25409826
J Neurosci. 2000 Jul 1;20(13):4992-5000
pubmed: 10864957
J Neurosci. 1999 Jun 15;19(12):RC12
pubmed: 10366650
Nat Genet. 2017 Oct;49(10):1539-1545
pubmed: 28846100
Nucleic Acids Res. 2014 Jan;42(Database issue):D986-92
pubmed: 24174537
Cell. 2022 Aug 4;185(16):3041-3055.e25
pubmed: 35917817
Am J Hum Genet. 2014 Feb 6;94(2):303-9
pubmed: 24462372
Cell. 2016 Oct 20;167(3):633-642.e11
pubmed: 27768887
Hum Mol Genet. 2015 Oct 15;24(R1):R102-10
pubmed: 26152199
J Med Genet. 2002 Jun;39(6):E30
pubmed: 12070262
Cell. 2015 Sep 24;163(1):68-83
pubmed: 26365491
Wiley Interdiscip Rev Dev Biol. 2018 Nov;7(6):e324
pubmed: 29944783
Development. 2000 Dec;127(24):5297-307
pubmed: 11076752
Mol Biol Evol. 2016 Apr;33(4):1008-18
pubmed: 26715627
Front Cell Neurosci. 2017 Apr 24;11:114
pubmed: 28484373
Histochemistry. 1993 Dec;100(6):431-40
pubmed: 7512949
Neurosci Biobehav Rev. 2014 Jan;38:135-59
pubmed: 24239732
Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662
pubmed: 27789702

Auteurs

Alan P Tenney (AP)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.

Silvio Alessandro Di Gioia (SA)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.
Regeneron Pharmaceuticals, Tarrytown, NY, USA.

Bryn D Webb (BD)

Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Wai-Man Chan (WM)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.
Howard Hughes Medical Institute, Chevy Chase, MD, USA.

Elke de Boer (E)

Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.
Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, the Netherlands.

Sarah J Garnai (SJ)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Harvard-MIT Health Sciences and Technology, Harvard Medical School, Boston, MA, USA.

Brenda J Barry (BJ)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.
Howard Hughes Medical Institute, Chevy Chase, MD, USA.

Tammy Ray (T)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Michael Kosicki (M)

Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Caroline D Robson (CD)

Department of Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Zhongyang Zhang (Z)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Thomas E Collins (TE)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Alon Gelber (A)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Brandon M Pratt (BM)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Yuko Fujiwara (Y)

Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.

Arushi Varshney (A)

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

Monkol Lek (M)

Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.

Peter E Warburton (PE)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Center for Advanced Genomics Technology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Carol Van Ryzin (C)

Metabolic Medicine Branch, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Tanya J Lehky (TJ)

EMG Section, National Institute of Neurological Disorders and Stroke, NIH, Bethesda, MD, USA.

Christopher Zalewski (C)

Audiology Unit, Otolaryngology Branch, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, MD, USA.

Kelly A King (KA)

Audiology Unit, Otolaryngology Branch, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, MD, USA.

Carmen C Brewer (CC)

Audiology Unit, Otolaryngology Branch, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, MD, USA.

Audrey Thurm (A)

Neurodevelopmental and Behavioral Phenotyping Service, National Institute of Mental Health, NIH, Bethesda, MD, USA.

Joseph Snow (J)

Office of the Clinical Director, National Institute of Mental Health, NIH, Bethesda, MD, USA.

Flavia M Facio (FM)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Invitae Corporation, San Francisco, CA, USA.

Narisu Narisu (N)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Lori L Bonnycastle (LL)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Amy Swift (A)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Peter S Chines (PS)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Jessica L Bell (JL)

Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Suresh Mohan (S)

Department of Otolaryngology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.

Mary C Whitman (MC)

F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.
Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.

Sandra E Staffieri (SE)

Centre for Eye Research Australia, Royal Victorian Eye and Ear Hospital, and University of Melbourne, Melbourne, Victoria, Australia.
Department of Ophthalmology, Royal Children's Hospital, Parkville, Victoria, Australia.

James E Elder (JE)

Department of Ophthalmology, Royal Children's Hospital, Parkville, Victoria, Australia.

Joseph L Demer (JL)

Stein Eye Institute and Departments of Ophthalmology, Neurology, and Bioengineering, University of California, Los Angeles, Los Angeles, CA, USA.

Alcy Torres (A)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Department of Pediatrics, Boston Medical Center, Boston University Aram V. Chobanian & Edward Avedisian School of Medicine, Boston, MA, USA.

Elza Rachid (E)

Department of Ophthalmology, American University of Beirut Medical Center, Beirut, Lebanon.

Christiane Al-Haddad (C)

Department of Ophthalmology, American University of Beirut Medical Center, Beirut, Lebanon.

Rose-Mary Boustany (RM)

Pediatrics & Adolescent Medicine/Biochemistry & Molecular Genetics, American University of Beirut Medical Center, Beirut, Lebanon.

David A Mackey (DA)

Lions Eye Institute, University of Western Australia, Perth, Australia.

Angela F Brady (AF)

North West Thames Regional Genetics Service, Northwick Park Hospital, Harrow, UK.

María Fenollar-Cortés (M)

Unidad de Genética Clínica, Instituto de Medicina del Laboratorio. IdISSC, Hospital Clínico San Carlos, Madrid, Spain.

Melanie Fradin (M)

Service de Génétique Clinique, CHU Rennes, Centre Labellisé Anomalies du Développement, Rennes, France.

Tjitske Kleefstra (T)

Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.
Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, the Netherlands.
Center of Excellence for Neuropsychiatry, Vincent van Gogh Institute for Psychiatry, Venray, the Netherlands.

George W Padberg (GW)

Department of Neurology, Radboud University Medical Center, Nijmegen, the Netherlands.

Salmo Raskin (S)

Centro de Aconselhamento e Laboratório Genetika, Curitiba, Paraná, Brazil.

Mario Teruo Sato (MT)

Department of Ophthalmology & Otorhinolaryngology, Federal University of Paraná, Curitiba, Paraná, Brazil.

Stuart H Orkin (SH)

Howard Hughes Medical Institute, Chevy Chase, MD, USA.
Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.

Stephen C J Parker (SCJ)

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

Tessa A Hadlock (TA)

Department of Otolaryngology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.

Lisenka E L M Vissers (LELM)

Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.
Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, the Netherlands.

Hans van Bokhoven (H)

Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.
Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, the Netherlands.

Ethylin Wang Jabs (EW)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Department of Cell, Developmental, and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Francis S Collins (FS)

Center for Precision Health Research, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Len A Pennacchio (LA)

Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Irini Manoli (I)

Metabolic Medicine Branch, National Human Genome Research Institute, NIH, Bethesda, MD, USA.

Elizabeth C Engle (EC)

Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA. elizabeth.engle@childrens.harvard.edu.
F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA. elizabeth.engle@childrens.harvard.edu.
Howard Hughes Medical Institute, Chevy Chase, MD, USA. elizabeth.engle@childrens.harvard.edu.
Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA. elizabeth.engle@childrens.harvard.edu.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH