The Dynamic Sensorium competition for predicting large-scale mouse visual cortex activity from videos.

dynamic stimulus mouse visual cortex neural prediction system identification

Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
31 May 2023
Historique:
pubmed: 3 7 2023
medline: 3 7 2023
entrez: 3 7 2023
Statut: epublish

Résumé

Understanding how biological visual systems process information is challenging due to the complex nonlinear relationship between neuronal responses and high-dimensional visual input. Artificial neural networks have already improved our understanding of this system by allowing computational neuroscientists to create predictive models and bridge biological and machine vision. During the Sensorium 2022 competition, we introduced benchmarks for vision models with static input (i.e. images). However, animals operate and excel in dynamic environments, making it crucial to study and understand how the brain functions under these conditions. Moreover, many biological theories, such as predictive coding, suggest that previous input is crucial for current input processing. Currently, there is no standardized benchmark to identify state-of-the-art dynamic models of the mouse visual system. To address this gap, we propose the Sensorium 2023 Benchmark Competition with dynamic input (https://www.sensorium-competition.net/). This competition includes the collection of a new large-scale dataset from the primary visual cortex of five mice, containing responses from over 38,000 neurons to over 2 hours of dynamic stimuli per neuron. Participants in the main benchmark track will compete to identify the best predictive models of neuronal responses for dynamic input (i.e. video). We will also host a bonus track in which submission performance will be evaluated on out-of-domain input, using withheld neuronal responses to dynamic input stimuli whose statistics differ from the training set. Both tracks will offer behavioral data along with video stimuli. As before, we will provide code, tutorials, and strong pre-trained baseline models to encourage participation. We hope this competition will continue to strengthen the accompanying Sensorium benchmarks collection as a standard tool to measure progress in large-scale neural system identification models of the entire mouse visual hierarchy and beyond.

Identifiants

pubmed: 37396602
pii: 2305.19654
pmc: PMC10312815
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIMH NIH HHS
ID : RF1 MH130416
Pays : United States
Organisme : NINDS NIH HHS
ID : U01 NS113294
Pays : United States
Organisme : NIMH NIH HHS
ID : U19 MH114830
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY026927
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY002520
Pays : United States
Organisme : NIMH NIH HHS
ID : RF1 MH126883
Pays : United States

Auteurs

Polina Turishcheva (P)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.

Paul G Fahey (PG)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.

Laura Hansel (L)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.

Rachel Froebe (R)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.

Kayla Ponder (K)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.

Michaela Vystrčilová (M)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.

Konstantin F Willeke (KF)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.
International Max Planck Research School for Intelligent Systems, University of Tübingen, Germany.
Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany.

Mohammad Bashiri (M)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.
International Max Planck Research School for Intelligent Systems, University of Tübingen, Germany.
Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany.

Eric Wang (E)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.

Zhiwei Ding (Z)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.

Andreas S Tolias (AS)

Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Electrical and Computer Engineering, Rice University, Houston, USA.

Fabian H Sinz (FH)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.
International Max Planck Research School for Intelligent Systems, University of Tübingen, Germany.
Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany.

Alexander S Ecker (AS)

Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.
Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.

Classifications MeSH