A Comparison of Neuroelectrophysiology Databases.

Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
30 Aug 2023
Historique:
pubmed: 10 7 2023
medline: 10 7 2023
entrez: 10 7 2023
Statut: epublish

Résumé

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.

Identifiants

PMID: 37426452 PMC: PMC10327244
pubmed: 37426452
pii: 2306.15041
pmc: PMC10327244
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIMH NIH HHS
ID : R24 MH117179
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH120037
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH117529
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH117295
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH111417
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH116922
Pays : United States
Organisme : NINDS NIH HHS
ID : R37 NS021135
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH114796
Pays : United States

Commentaires et corrections

Type : UpdateIn

Déclaration de conflit d'intérêts

Competing Interests DABI Affiliated Researchers: Priyanka Subash, Alex Gray, Misque Boswell, Samantha L. Cohen, Rachael Garner, Sana Salehi, Calvary Fisher, Samuel Hobel, Nader Pouratian, Arthur W. Toga, and Dominique Duncan; DANDI and NWB Affiliated Researchers: Satrajit Ghosh, Yaroslav Halchenko, Benjamin Dichter; OpenNeuro Affiliated Researchers: Russell A. Poldrack, Chris Markiewicz; BIDS Affiliated Researchers: Dora Hermes; NEMAR Affiliated Researchers: Arnaud Delorme, Scott Makeig; Brain-CODE Affiliated Researchers: Brendan Behan, Alana Sparks; RAVE Affiliated Researchers: Zhengjia Wang, John Magnotti, Michael Beauchamp.

Auteurs

Priyanka Subash (P)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Alex Gray (A)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Misque Boswell (M)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Samantha L Cohen (SL)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Rachael Garner (R)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Sana Salehi (S)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Calvary Fisher (C)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Samuel Hobel (S)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Satrajit Ghosh (S)

McGovern Institute for Brain Research, MIT Brain and Cognitive Sciences, 77 Massachusetts Avenue, Cambridge MA 02139.

Yaroslav Halchenko (Y)

Department of Psychological & Brain Sciences, Center for Cognitive Neuroscience, Dartmouth Brain Imaging Center, Dartmouth College, 6207 Moore Hall, Hanover NH 03755.

Benjamin Dichter (B)

CatalystNeuro, Benicia CA 94510.

Russell A Poldrack (RA)

Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford CA 94305.

Chris Markiewicz (C)

Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford CA 94305.

Dora Hermes (D)

Mayo Clinic, Department of Physiology & Biomedical Engineering, 200 1st Street SW, Rochester MN 55905.

Arnaud Delorme (A)

Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla CA 92093.

Scott Makeig (S)

Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla CA 92093.

Brendan Behan (B)

Ontario Brain Institute, 1 Richmond Street West, Toronto ON M5H 3W4, Canada.

Alana Sparks (A)

Indoc Research, Toronto ON, Canada.

Stephen R Arnott (SR)

Rotman Research Institute, Toronto ON, Canada.

Zhengjia Wang (Z)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.

John Magnotti (J)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.

Michael S Beauchamp (MS)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia PA 19104.

Nader Pouratian (N)

Department of Neurological Surgery, University of Texas Southwestern Medical Center, 5303 Harry Hines Blvd, Dallas TX 75390.

Arthur W Toga (AW)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Dominique Duncan (D)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles CA 90033.

Classifications MeSH